UHGV-0090631

Genome information

Genome length 25,086 bps

CDS count 38

Completeness 54.23% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090631
vOTU ID	vOTU-033430
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187839
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.67
Jumbo phage	No

Genome content
Genome length	25,086 bps
GC content	56.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	95.77%
Average CDS length	636.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090631_2	PHROG	phrog_874	NA	unknown function
UHGV-0090631_2	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0090631_2	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0090631_3	PHROG	phrog_21101	NA	unknown function
UHGV-0090631_3	UniRef90	UniRef90_UPI000F069409	NA	NA
UHGV-0090631_3	eggNOG-mapper	1280689.AUJC01000006_gene2694	NA	NA
UHGV-0090631_3	Pfam	PF07866	NA	DUF1653
UHGV-0090631_3	COG	COG4728	NA	NA
UHGV-0090631_3	Structural annotation	PF07866, NF038082, COG4728	NA	NA
UHGV-0090631_4	PHROG	phrog_33866	NA	unknown function
UHGV-0090631_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0090631_8	UniRef90	UniRef90_R5GVZ3	Sigma70_r4 domain-containing protein	NA
UHGV-0090631_8	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0090631_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0090631_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0090631_9	UniRef90	UniRef90_UPI00164CD799	terminase small subunit	NA
UHGV-0090631_9	eggNOG-mapper	203119.Cthe_2473	Terminase small subunit	NA
UHGV-0090631_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0090631_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0090631_9	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0090631_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090631_10	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0090631_10	UniRef90	UniRef90_UPI00164BC0D2	PBSX family phage terminase large subunit	NA
UHGV-0090631_10	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0090631_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0090631_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0090631_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0090631_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090631_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0090631_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-0090631_11	UniRef90	UniRef90_UPI00164A60DC	phage portal protein	NA
UHGV-0090631_11	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0090631_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0090631_11	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0090631_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0090631_12	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0090631_12	UniRef90	UniRef90_A0A396QBG6	Phage_Mu_F domain-containing protein	NA
UHGV-0090631_12	eggNOG-mapper	1408437.JNJN01000045_gene594	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0090631_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0090631_12	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0090631_12	COG	COG2369	NA	NA
UHGV-0090631_12	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0090631_13	eggNOG-mapper	235909.GK2142	NA	NA
UHGV-0090631_14	UniRef90	UniRef90_A0A3E2XXT8	Copper amine oxidase N-terminal domain-containing protein	NA
UHGV-0090631_14	eggNOG-mapper	485916.Dtox_4298	PFAM Copper amine	NA
UHGV-0090631_14	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0090631_14	COG	COG0103	Ribosomal protein S9	NA
UHGV-0090631_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0090631_15	UniRef90	UniRef90_UPI00164B2723	phage scaffolding protein	NA
UHGV-0090631_15	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0090631_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0090631_15	Structural annotation	PF06810	NA	NA
UHGV-0090631_16	PHROG	phrog_212	major head protein	head and packaging
UHGV-0090631_16	UniRef90	UniRef90_UPI00164C1105	phage capsid protein	NA
UHGV-0090631_16	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0090631_16	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0090631_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0090631_18	UniRef90	UniRef90_UPI0003A55EF3	phage head-tail connector protein	NA
UHGV-0090631_18	eggNOG-mapper	1243664.CAVL020000019_gene3762	NA	NA
UHGV-0090631_18	Structural annotation	PF05135	NA	NA
UHGV-0090631_19	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0090631_19	UniRef90	UniRef90_UPI001F0965FE	ABC transporter ATP-binding protein	NA
UHGV-0090631_19	eggNOG-mapper	1408437.JNJN01000045_gene589	NA	NA
UHGV-0090631_19	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0090631_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0090631_20	UniRef90	UniRef90_UPI00164BF0D0	HK97 gp10 family phage protein	NA
UHGV-0090631_20	eggNOG-mapper	1408437.JNJN01000045_gene588	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0090631_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0090631_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0090631_21	PHROG	phrog_525	NA	unknown function
UHGV-0090631_21	UniRef90	UniRef90_R6PDQ8	NA	NA
UHGV-0090631_21	eggNOG-mapper	1408437.JNJN01000045_gene587	NA	NA
UHGV-0090631_21	Pfam	PF20765	NA	DUF6838
UHGV-0090631_21	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0090631_22	PHROG	phrog_966	NA	unknown function
UHGV-0090631_22	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-0090631_23	PHROG	phrog_279	tail sheath	tail
UHGV-0090631_23	UniRef90	UniRef90_UPI0004E1073B	phage tail sheath family protein	NA
UHGV-0090631_23	eggNOG-mapper	1408437.JNJN01000045_gene585	Phage tail sheath C-terminal domain	NA
UHGV-0090631_23	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0090631_23	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0090631_23	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0090631_23	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0090631_24	PHROG	phrog_365	tail protein	tail
UHGV-0090631_24	UniRef90	UniRef90_UPI00164A7994	phage tail tube protein	NA
UHGV-0090631_24	eggNOG-mapper	1408437.JNJN01000045_gene584	Phage tail tube protein	NA
UHGV-0090631_24	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0090631_24	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0090631_25	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0090631_25	UniRef90	UniRef90_UPI00164C9E0D	phage portal protein	NA
UHGV-0090631_25	eggNOG-mapper	1408437.JNJN01000045_gene583	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0090631_25	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0090631_25	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0090631_26	PHROG	phrog_10943	NA	unknown function
UHGV-0090631_26	eggNOG-mapper	1408437.JNJN01000045_gene582	NA	NA
UHGV-0090631_27	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0090631_27	UniRef90	UniRef90_UPI00164CC4C3	tape measure protein	NA
UHGV-0090631_27	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0090631_27	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0090631_27	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0090631_27	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0090631_27	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0090631_28	PHROG	phrog_380	endolysin	lysis
UHGV-0090631_28	UniRef90	UniRef90_UPI00164C57EA	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0090631_28	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-0090631_28	Pfam	PF01476	LysM domain	LysM
UHGV-0090631_28	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0090631_28	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0090631_29	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0090631_29	PHROG	phrog_400	tail protein	tail
UHGV-0090631_29	UniRef90	UniRef90_UPI00164B3E2C	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0090631_29	eggNOG-mapper	1408437.JNJN01000045_gene579	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0090631_29	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0090631_29	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0090631_29	Structural annotation	PF01551, PF05954, MF_02071, NF040883, NF033848, TIGR00413, COG0739, COG4379, COG3584	NA	NA
UHGV-0090631_30	UniRef90	UniRef90_UPI00164B90FE	NA	NA
UHGV-0090631_30	eggNOG-mapper	1151292.QEW_1352	NA	NA
UHGV-0090631_30	Pfam	PF10844	NA	DUF2577
UHGV-0090631_30	Structural annotation	PF10844	NA	NA
UHGV-0090631_31	PHROG	phrog_120	baseplate protein	tail
UHGV-0090631_31	UniRef90	UniRef90_UPI00164B1C84	NA	NA
UHGV-0090631_31	eggNOG-mapper	1408437.JNJN01000045_gene577	NA	NA
UHGV-0090631_31	Pfam	PF10934	NA	DUF2634
UHGV-0090631_31	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0090631_31	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0090631_32	PHROG	phrog_1608	tail protein	tail
UHGV-0090631_32	UniRef90	UniRef90_UPI00164AD959	baseplate J/gp47 family protein	NA
UHGV-0090631_32	eggNOG-mapper	1408437.JNJN01000045_gene576	Baseplate J-like protein	NA
UHGV-0090631_32	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0090631_32	COG	COG3299	NA	NA
UHGV-0090631_32	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0090631_33	PHROG	phrog_521	tail protein	tail
UHGV-0090631_33	UniRef90	UniRef90_UPI00164C149B	NA	NA
UHGV-0090631_33	eggNOG-mapper	1408437.JNJN01000045_gene575	NA	NA
UHGV-0090631_33	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0090631_33	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0090631_33	Structural annotation	PF10076, NF001031, COG3778	NA	NA
UHGV-0090631_34	PHROG	phrog_11518	tail fiber protein	tail
UHGV-0090631_34	eggNOG-mapper	1279038.KB907344_gene3538	Phage Tail Collar Domain	NA
UHGV-0090631_34	COG	COG4675	Phage tail collar domain	NA
UHGV-0090631_36	PHROG	phrog_4105	NA	unknown function
UHGV-0090631_36	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0090631_37	PHROG	phrog_297	holin	lysis
UHGV-0090631_37	UniRef90	UniRef90_A0A1C6CJK7	Small integral membrane protein	NA
UHGV-0090631_37	eggNOG-mapper	445972.ANACOL_01874	COG COG5546 Small integral membrane protein	NA
UHGV-0090631_37	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0090631_37	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0090631_37	COG	COG5546	NA	NA
UHGV-0090631_37	Structural annotation	COG5546	NA	NA
UHGV-0090631_38	eggNOG-mapper	1408437.JNJN01000040_gene194	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0090631_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA