UHGV-0090644

Genome information

Genome length 29,426 bps

CDS count 51

Completeness 75.30% (medium-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090644
vOTU ID	vOTU-030797
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177085
BioSample	SAMEA3449417
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.91
Jumbo phage	No

Genome content
Genome length	29,426 bps
GC content	57.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.31%
Average CDS length	541.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090644_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0090644_2	PHROG	phrog_1129	holin	lysis
UHGV-0090644_2	UniRef90	UniRef90_UPI00164CD48B	phage holin family protein	NA
UHGV-0090644_2	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0090644_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0090644_2	Structural annotation	PF06946	NA	NA
UHGV-0090644_3	KOfam	K14059	int; integrase	NA
UHGV-0090644_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0090644_3	UniRef90	UniRef90_UPI001966D9E7	site-specific integrase	NA
UHGV-0090644_3	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0090644_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0090644_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0090644_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0090644_4	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0090644_4	UniRef90	UniRef90_A0A6A8VJE2	NA	NA
UHGV-0090644_4	eggNOG-mapper	883112.HMPREF9707_00007	tRNA_anti-like	NA
UHGV-0090644_4	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0090644_4	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0090644_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0090644_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0090644_5	UniRef90	UniRef90_UPI000C7BE75B	helix-turn-helix transcriptional regulator	NA
UHGV-0090644_5	eggNOG-mapper	428125.CLOLEP_02738	SMART helix-turn-helix domain protein	NA
UHGV-0090644_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0090644_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0090644_5	Structural annotation	PF12844, MF_02017, NF041951, COG3655	NA	NA
UHGV-0090644_6	UniRef90	UniRef90_A0A316PLZ6	XRE family transcriptional regulator	NA
UHGV-0090644_6	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0090644_6	Structural annotation	TIGR03070	NA	NA
UHGV-0090644_7	Structural annotation	PF12728	NA	NA
UHGV-0090644_10	eggNOG-mapper	645991.Sgly_0367	NA	NA
UHGV-0090644_13	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0090644_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0090644_14	UniRef90	UniRef90_UPI001E572781	ERF family protein	NA
UHGV-0090644_14	eggNOG-mapper	1497679.EP56_08440	ERF superfamily	NA
UHGV-0090644_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0090644_15	PHROG	phrog_1389	NA	unknown function
UHGV-0090644_15	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0090644_15	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0090644_16	PHROG	phrog_7566	NA	unknown function
UHGV-0090644_16	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0090644_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0090644_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0090644_18	UniRef90	UniRef90_A0A4R1QLL2	Single-stranded DNA-binding protein	NA
UHGV-0090644_18	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0090644_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0090644_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0090644_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0090644_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0090644_18	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0090644_19	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0090644_19	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090644_19	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-0090644_19	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-0090644_19	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0090644_19	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0090644_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090644_19	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0090644_20	Structural annotation	PF11417	NA	NA
UHGV-0090644_21	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090644_21	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0090644_21	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0090644_23	eggNOG-mapper	886882.PPSC2_p0386	NA	NA
UHGV-0090644_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0090644_24	UniRef90	UniRef90_UPI001F4011B8	helix-turn-helix domain-containing protein	NA
UHGV-0090644_24	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0090644_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0090644_26	Structural annotation	PF04545	NA	NA
UHGV-0090644_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0090644_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0090644_28	UniRef90	UniRef90_A0A895HF95	Terminase small subunit	NA
UHGV-0090644_28	eggNOG-mapper	1196028.ALEF01000043_gene470	Terminase small subunit	NA
UHGV-0090644_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0090644_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0090644_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0090644_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090644_29	UniRef90	UniRef90_UPI0006822C99	terminase	NA
UHGV-0090644_29	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-0090644_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0090644_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0090644_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0090644_30	UniRef90	UniRef90_UPI001875FE3B	capsid protein	NA
UHGV-0090644_30	eggNOG-mapper	1507.HMPREF0262_01175	NA	NA
UHGV-0090644_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0090644_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0090644_31	UniRef90	UniRef90_A0A1C6HBH6	Phage minor capsid protein 2	NA
UHGV-0090644_31	eggNOG-mapper	1507.HMPREF0262_01176	Phage minor capsid protein 2	NA
UHGV-0090644_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0090644_31	COG	COG2369	NA	NA
UHGV-0090644_31	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0090644_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-0090644_34	UniRef90	UniRef90_UPI0018750F33	phage capsid protein	NA
UHGV-0090644_34	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0090644_34	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0090644_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0090644_35	eggNOG-mapper	1151292.QEW_2431	NA	NA
UHGV-0090644_36	PHROG	phrog_8710	NA	unknown function
UHGV-0090644_36	eggNOG-mapper	1507.HMPREF0262_01181	NA	NA
UHGV-0090644_36	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0090644_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0090644_37	UniRef90	UniRef90_A0A1C6GMA0	Minor capsid protein	NA
UHGV-0090644_37	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0090644_38	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0090644_38	UniRef90	UniRef90_UPI000A26871F	minor capsid protein	NA
UHGV-0090644_38	eggNOG-mapper	1507.HMPREF0262_01183	NA	NA
UHGV-0090644_38	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0090644_38	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0090644_39	PHROG	phrog_820	major tail protein	tail
UHGV-0090644_39	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-0090644_39	COG	COG5492	NA	NA
UHGV-0090644_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0090644_40	PHROG	phrog_8300	NA	unknown function
UHGV-0090644_40	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-0090644_40	Structural annotation	PF06896	NA	NA
UHGV-0090644_41	PHROG	phrog_8355	NA	unknown function
UHGV-0090644_41	UniRef90	UniRef90_UPI000A26E2D9	Gp15 family bacteriophage protein	NA
UHGV-0090644_41	eggNOG-mapper	1507.HMPREF0262_01186	NA	NA
UHGV-0090644_41	Structural annotation	PF06854	NA	NA
UHGV-0090644_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0090644_42	UniRef90	UniRef90_A0A174Z8D9	Phage-related protein	NA
UHGV-0090644_42	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0090644_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0090644_43	PHROG	phrog_1194	NA	unknown function
UHGV-0090644_43	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0090644_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0090644_44	PHROG	phrog_13879	NA	unknown function
UHGV-0090644_44	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0090644_44	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0090644_45	PHROG	phrog_18725	NA	unknown function
UHGV-0090644_45	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0090644_48	Structural annotation	NF040910	NA	NA
UHGV-0090644_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0090644_51	PHROG	phrog_291	endolysin	lysis
UHGV-0090644_51	UniRef90	UniRef90_K1SLR2	Glycoside hydrolase, family 25 (Fragment)	NA
UHGV-0090644_51	eggNOG-mapper	537013.CLOSTMETH_02711	hydrolase, family 25	NA
UHGV-0090644_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0090644_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA