UHGV-0090788

Genome information

Genome length 34,338 bps

CDS count 54

Completeness 63.76% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0090788
vOTU ID	vOTU-027142
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_200483
BioSample	SAMEA3449321
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.17
Jumbo phage	No

Genome content
Genome length	34,338 bps
GC content	49.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.60%
Average CDS length	565.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0090788_3	PHROG	phrog_874	NA	unknown function
UHGV-0090788_3	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0090788_3	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0090788_6	PHROG	phrog_8684	NA	unknown function
UHGV-0090788_6	UniRef90	UniRef90_A0A3D1NR16	YopX domain-containing protein	NA
UHGV-0090788_6	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0090788_6	Pfam	PF09643	YopX protein	YopX
UHGV-0090788_6	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0090788_6	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0090788_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0090788_8	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0090788_8	UniRef90	UniRef90_A0A374A0C9	Cytosine-specific methyltransferase	NA
UHGV-0090788_8	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0090788_8	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0090788_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0090788_8	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0090788_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0090788_8	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0090788_9	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0090788_9	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0090788_9	UniRef90	UniRef90_B0MZV1	Methyltransferase	NA
UHGV-0090788_9	eggNOG-mapper	445970.ALIPUT_02676	N-4 methylation of cytosine	NA
UHGV-0090788_9	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0090788_9	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0090788_9	COG	COG0863	DNA modification methylase	NA
UHGV-0090788_9	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0090788_10	PHROG	phrog_15937	NA	unknown function
UHGV-0090788_10	eggNOG-mapper	742727.HMPREF9447_04879	NA	NA
UHGV-0090788_11	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0090788_11	eggNOG-mapper	202954.BBNK01000034_gene3798	NA	NA
UHGV-0090788_11	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0090788_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0090788_12	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0090788_12	UniRef90	UniRef90_A0A840CTK1	DNA replication protein DnaC	NA
UHGV-0090788_12	eggNOG-mapper	445970.ALIPUT_01605	NA	NA
UHGV-0090788_12	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0090788_13	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0090788_13	UniRef90	UniRef90_UPI000B1F837B	NA	NA
UHGV-0090788_13	eggNOG-mapper	445970.ALIPUT_01604	NA	NA
UHGV-0090788_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0090788_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0090788_13	Structural annotation	PF14297	NA	NA
UHGV-0090788_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0090788_14	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-0090788_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0090788_15	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0090788_17	UniRef90	UniRef90_UPI0018977E4B	Rad52/Rad22 family DNA repair protein	NA
UHGV-0090788_17	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0090788_17	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0090788_17	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0090788_22	UniRef90	UniRef90_A0A7X7CF05	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0090788_23	UniRef90	UniRef90_UPI001AAF47BF	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0090788_23	eggNOG-mapper	742725.HMPREF9450_02060	NA	NA
UHGV-0090788_23	Structural annotation	PF21748, COG1598	NA	NA
UHGV-0090788_25	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0090788_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0090788_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0090788_31	UniRef90	UniRef90_A0A4Y1WPK9	Peptidase_S24 domain-containing protein	NA
UHGV-0090788_31	eggNOG-mapper	865938.Weevi_0143	NA	NA
UHGV-0090788_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0090788_31	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0090788_32	PHROG	phrog_4792	anti-repressor	transcription regulation
UHGV-0090788_32	UniRef90	UniRef90_A0A316NWF8	DNA-binding protein	NA
UHGV-0090788_32	eggNOG-mapper	585502.HMPREF0645_0768	ORF6N domain	NA
UHGV-0090788_32	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0090788_32	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0090788_32	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0090788_34	Structural annotation	PF14504	NA	NA
UHGV-0090788_35	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0090788_35	UniRef90	UniRef90_B0MXA5	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0090788_35	eggNOG-mapper	445970.ALIPUT_01644	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0090788_35	Pfam	PF05534	HicB family	HicB
UHGV-0090788_35	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0090788_35	Structural annotation	PF21748, PF05534, NF041264, COG4226	NA	NA
UHGV-0090788_36	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0090788_36	UniRef90	UniRef90_B0MXA6	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-0090788_36	eggNOG-mapper	445970.ALIPUT_01645	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0090788_36	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0090788_36	Structural annotation	COG1724	NA	NA
UHGV-0090788_38	UniRef90	UniRef90_A0A1Q6EL83	Hydroxyacid dehydrogenase	NA
UHGV-0090788_38	eggNOG-mapper	445970.ALIPUT_01206	Virulence protein RhuM family	NA
UHGV-0090788_38	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0090788_38	COG	COG3943	NA	NA
UHGV-0090788_38	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0090788_39	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0090788_39	UniRef90	UniRef90_UPI001E41025A	NA	NA
UHGV-0090788_39	eggNOG-mapper	1235788.C802_00067	ParB-like nuclease domain	NA
UHGV-0090788_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0090788_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0090788_39	Pfam	PF14386	NA	DUF4417
UHGV-0090788_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0090788_39	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0090788_41	PHROG	phrog_15125	NA	unknown function
UHGV-0090788_41	UniRef90	UniRef90_A0A1Y3WEV5	NA	NA
UHGV-0090788_41	eggNOG-mapper	1347393.HG726020_gene1343	NA	NA
UHGV-0090788_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0090788_42	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0090788_42	UniRef90	UniRef90_A0A1Q6F3Q9	Phage portal protein	NA
UHGV-0090788_42	eggNOG-mapper	445970.ALIPUT_01661	Phage terminase large subunit	NA
UHGV-0090788_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0090788_42	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0090788_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0090788_43	UniRef90	UniRef90_A0A4Q0J8Z9	Phage portal protein	NA
UHGV-0090788_43	eggNOG-mapper	445970.ALIPUT_01660	phage portal protein, SPP1	NA
UHGV-0090788_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0090788_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0090788_44	PHROG	phrog_5824	NA	unknown function
UHGV-0090788_44	eggNOG-mapper	445970.ALIPUT_01659	NA	NA
UHGV-0090788_45	PHROG	phrog_20501	NA	unknown function
UHGV-0090788_45	eggNOG-mapper	445970.ALIPUT_01658	NA	NA
UHGV-0090788_45	Structural annotation	PF21430, MF_00014, NF009633	NA	NA
UHGV-0090788_46	PHROG	phrog_29	major head protein	head and packaging
UHGV-0090788_46	UniRef90	UniRef90_A0A838Z0T2	Major capsid protein	NA
UHGV-0090788_46	eggNOG-mapper	445970.ALIPUT_01657	Phage major capsid protein E	NA
UHGV-0090788_46	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0090788_46	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0090788_47	PHROG	phrog_16646	NA	unknown function
UHGV-0090788_47	eggNOG-mapper	411477.PARMER_01697	NA	NA
UHGV-0090788_47	Pfam	PF20449	NA	DUF6706
UHGV-0090788_47	Structural annotation	PF20449	NA	NA
UHGV-0090788_48	Structural annotation	PF20536	NA	NA
UHGV-0090788_49	PHROG	phrog_5597	NA	unknown function
UHGV-0090788_49	eggNOG-mapper	445970.ALIPUT_01654	NA	NA
UHGV-0090788_49	Structural annotation	PF16807, TIGR01633	NA	NA
UHGV-0090788_50	PHROG	phrog_14600	NA	unknown function
UHGV-0090788_50	eggNOG-mapper	445970.ALIPUT_01653	NA	NA
UHGV-0090788_50	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0090788_52	eggNOG-mapper	585543.HMPREF0969_03351	NA	NA
UHGV-0090788_53	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0090788_53	PHROG	phrog_14295	NA	unknown function
UHGV-0090788_53	UniRef90	UniRef90_A0A174HCG8	ATPase involved in DNA repair	NA
UHGV-0090788_53	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-0090788_53	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0090788_54	PHROG	phrog_5377	NA	unknown function
UHGV-0090788_54	eggNOG-mapper	1077285.AGDG01000032_gene4183	NA	NA