UHGV-0091059

Genome information

Genome length 78,887 bps

CDS count 95

Completeness 99.90% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091059
vOTU ID	vOTU-014654
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_192134
BioSample	SAMEA3449362
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.44
Jumbo phage	No

Genome content
Genome length	78,887 bps
GC content	44.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	87.87%
Average CDS length	732.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091059_2	PHROG	phrog_38431	NA	unknown function
UHGV-0091059_2	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0091059_2	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0091059_4	PHROG	phrog_28898	NA	unknown function
UHGV-0091059_4	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0091059_4	Structural annotation	PF10781	NA	NA
UHGV-0091059_5	PHROG	phrog_31654	NA	unknown function
UHGV-0091059_5	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0091059_6	PHROG	phrog_16490	NA	unknown function
UHGV-0091059_6	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0091059_6	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0091059_8	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0091059_8	UniRef90	UniRef90_UPI001F1F6D15	Rha family transcriptional regulator	NA
UHGV-0091059_8	eggNOG-mapper	1392486.JIAF01000004_gene847	Phage regulatory protein	NA
UHGV-0091059_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0091059_8	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0091059_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0091059_8	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0091059_9	PHROG	phrog_14770	NA	unknown function
UHGV-0091059_9	UniRef90	UniRef90_UPI001C395052	strawberry notch C-terminal domain-containing protein	NA
UHGV-0091059_9	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0091059_9	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0091059_9	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0091059_9	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0091059_9	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0091059_9	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0091059_12	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0091059_13	Structural annotation	PF02805	NA	NA
UHGV-0091059_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091059_14	UniRef90	UniRef90_A0A646FX20	Helix-turn-helix transcriptional regulator	NA
UHGV-0091059_14	eggNOG-mapper	992406.RIA_0236	sequence-specific DNA binding	NA
UHGV-0091059_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091059_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0091059_14	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0091059_16	Structural annotation	PF20012	NA	NA
UHGV-0091059_23	Structural annotation	PF18300	NA	NA
UHGV-0091059_28	Structural annotation	PF10623	NA	NA
UHGV-0091059_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0091059_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0091059_29	UniRef90	UniRef90_A0A646FXN4	Site-specific integrase	NA
UHGV-0091059_29	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0091059_29	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0091059_29	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0091059_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091059_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0091059_29	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0091059_31	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0091059_31	PHROG	phrog_200	lipoprotein	other
UHGV-0091059_31	UniRef90	UniRef90_A0A3R6JV58	Prohibitin family protein	NA
UHGV-0091059_31	eggNOG-mapper	1122621.ATZA01000001_gene1899	stress-induced mitochondrial fusion	NA
UHGV-0091059_31	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0091059_31	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0091059_31	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0091059_32	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091059_32	UniRef90	UniRef90_A0A7M1S051	HNHc domain-containing protein	NA
UHGV-0091059_32	eggNOG-mapper	693746.OBV_01870	HNH endonuclease	NA
UHGV-0091059_32	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0091059_32	Structural annotation	PF10729, MF_01580, NF007510	NA	NA
UHGV-0091059_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0091059_37	UniRef90	UniRef90_A0A415VG24	XRE family transcriptional regulator	NA
UHGV-0091059_37	eggNOG-mapper	694427.Palpr_0738	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091059_37	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0091059_37	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0091059_39	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091059_39	UniRef90	UniRef90_A0A415VFZ7	Recombinase	NA
UHGV-0091059_39	eggNOG-mapper	742725.HMPREF9450_02079	NA	NA
UHGV-0091059_39	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0091059_39	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091059_39	Structural annotation	PF05766	NA	NA
UHGV-0091059_40	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0091059_40	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0091059_40	UniRef90	UniRef90_A0A646FRN8	dUTPase domain-containing protein	NA
UHGV-0091059_40	eggNOG-mapper	459495.SPLC1_S101750	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0091059_40	Pfam	PF00692	dUTPase	dUTPase
UHGV-0091059_40	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0091059_40	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0091059_42	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0091059_42	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091059_42	UniRef90	UniRef90_A0A3R6HGN7	AAA_15 domain-containing protein	NA
UHGV-0091059_42	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0091059_42	Pfam	PF13476	AAA domain	AAA_23
UHGV-0091059_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0091059_42	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0091059_43	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0091059_43	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091059_43	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-0091059_43	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-0091059_43	Pfam	PF03837	RecT family	RecT
UHGV-0091059_43	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0091059_43	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0091059_43	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0091059_44	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0091059_44	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0091059_44	UniRef90	UniRef90_A0A415VCK3	Lactamase_B domain-containing protein	NA
UHGV-0091059_44	eggNOG-mapper	1347393.HG726022_gene3604	Metallo-beta-lactamase superfamily	NA
UHGV-0091059_44	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0091059_44	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0091059_44	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0091059_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0091059_46	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0091059_46	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091059_47	Structural annotation	PF20338	NA	NA
UHGV-0091059_53	Structural annotation	PF17457	NA	NA
UHGV-0091059_54	Structural annotation	PF11717, NF010729	NA	NA
UHGV-0091059_55	Structural annotation	PF08141	NA	NA
UHGV-0091059_63	UniRef90	UniRef90_A0A3R6HTB0	NA	NA
UHGV-0091059_63	Pfam	PF04448	NA	DUF551
UHGV-0091059_63	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0091059_67	UniRef90	UniRef90_A0A353E7E9	Fructan hydrolase	NA
UHGV-0091059_67	eggNOG-mapper	484018.BACPLE_02623	NA	NA
UHGV-0091059_68	UniRef90	UniRef90_A0A374TAT3	NA	NA
UHGV-0091059_68	Structural annotation	PF16225	NA	NA
UHGV-0091059_70	PHROG	phrog_32516	NA	unknown function
UHGV-0091059_70	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0091059_70	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0091059_73	PHROG	phrog_27246	NA	unknown function
UHGV-0091059_76	PHROG	phrog_20732	NA	unknown function
UHGV-0091059_76	UniRef90	UniRef90_A0A6G7X1I7	Phage holin family protein	NA
UHGV-0091059_76	eggNOG-mapper	742727.HMPREF9447_04857	NA	NA
UHGV-0091059_76	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0091059_77	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0091059_77	PHROG	phrog_181	endolysin	lysis
UHGV-0091059_77	UniRef90	UniRef90_A0A353E7E4	Glyco_hydro_19_cat domain-containing protein	NA
UHGV-0091059_77	eggNOG-mapper	160488.PP_3066	hmm pf00182	NA
UHGV-0091059_77	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0091059_77	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0091059_78	eggNOG-mapper	679190.HMPREF0650_1967	NA	NA
UHGV-0091059_79	UniRef90	UniRef90_A0A3R6M5X3	DNA-binding protein	NA
UHGV-0091059_79	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0091059_79	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0091059_80	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0091059_80	UniRef90	UniRef90_UPI001C38A690	terminase	NA
UHGV-0091059_80	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0091059_80	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0091059_80	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091059_83	Structural annotation	PF02368	NA	NA
UHGV-0091059_85	PHROG	phrog_156	portal protein	head and packaging
UHGV-0091059_85	eggNOG-mapper	1121098.HMPREF1534_01127	NA	NA
UHGV-0091059_85	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0091059_86	PHROG	phrog_22323	NA	unknown function
UHGV-0091059_86	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-0091059_87	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0091059_89	Structural annotation	PF17212	NA	NA
UHGV-0091059_90	Structural annotation	PF17994	NA	NA
UHGV-0091059_91	PHROG	phrog_13518	NA	unknown function
UHGV-0091059_91	Structural annotation	COG5456	NA	NA
UHGV-0091059_92	PHROG	phrog_9391	NA	unknown function
UHGV-0091059_92	UniRef90	UniRef90_UPI001C38A0C8	CotH kinase family protein	NA
UHGV-0091059_92	eggNOG-mapper	1233951.IO90_08605	CotH kinase protein	NA
UHGV-0091059_92	Pfam	PF08757	CotH kinase protein	CotH
UHGV-0091059_93	KOfam	K13730	inlA; internalin A	NA
UHGV-0091059_93	Pfam	PF12799	Leucine Rich repeats (2 copies)	LRR_4
UHGV-0091059_93	Structural annotation	NF033190, COG4886	NA	NA