UHGV-0091102

Genome information

Genome length 30,599 bps

CDS count 49

Completeness 76.62% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091102
vOTU ID	vOTU-026604
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_200388
BioSample	SAMEA3449152
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.57
Jumbo phage	No

Genome content
Genome length	30,599 bps
GC content	36.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.04%
Average CDS length	578.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091102_1	KOfam	K06213	mgtE; magnesium transporter	NA
UHGV-0091102_1	UniRef90	UniRef90_A5Z9M0	Magnesium transporter MgtE	NA
UHGV-0091102_1	eggNOG-mapper	411463.EUBVEN_02416	Acts as a magnesium transporter	NA
UHGV-0091102_1	Pfam	PF03448	MgtE intracellular N domain	MgtE_N
UHGV-0091102_1	Pfam	PF00571	CBS domain	CBS
UHGV-0091102_1	Pfam	PF01769	Divalent cation transporter	MgtE
UHGV-0091102_1	NCBIFam	TIGR00400.1	magnesium transporter	NA
UHGV-0091102_1	COG	COG2239	Mg/Co/Ni transporter MgtE (contains CBS domain)	NA
UHGV-0091102_2	UniRef90	UniRef90_A0A373VU48	XRE family transcriptional regulator	NA
UHGV-0091102_2	eggNOG-mapper	140626.JHWB01000009_gene1336	sequence-specific DNA binding	NA
UHGV-0091102_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091102_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0091102_3	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0091102_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091102_4	PHROG	phrog_670	endolysin	lysis
UHGV-0091102_4	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0091102_4	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0091102_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091102_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0091102_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0091102_5	PHROG	phrog_443	holin	lysis
UHGV-0091102_5	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0091102_5	eggNOG-mapper	1211844.CBLM010000023_gene976	Putative lactococcus lactis phage r1t holin	NA
UHGV-0091102_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0091102_5	Structural annotation	PF16945	NA	NA
UHGV-0091102_6	PHROG	phrog_1863	NA	unknown function
UHGV-0091102_6	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0091102_7	eggNOG-mapper	1123075.AUDP01000020_gene1530	Transposase	NA
UHGV-0091102_7	COG	COG4372	NA	NA
UHGV-0091102_9	PHROG	phrog_1382	NA	unknown function
UHGV-0091102_9	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0091102_9	Structural annotation	NF040910	NA	NA
UHGV-0091102_10	PHROG	phrog_18126	NA	unknown function
UHGV-0091102_11	PHROG	phrog_5302	tail protein	tail
UHGV-0091102_11	UniRef90	UniRef90_A0A564WU27	Chromosome partition protein Smc	NA
UHGV-0091102_11	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0091102_11	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0091102_12	PHROG	phrog_6616	tail protein	tail
UHGV-0091102_12	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0091102_12	COG	COG4926	Phage-related protein	NA
UHGV-0091102_12	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0091102_13	PHROG	phrog_1194	NA	unknown function
UHGV-0091102_13	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0091102_13	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-0091102_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0091102_14	KOfam	K16551	AKAP9, AKAP350; A-kinase anchor protein 9	NA
UHGV-0091102_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0091102_14	UniRef90	UniRef90_A0A173W8C4	Chromosome segregation protein	NA
UHGV-0091102_14	eggNOG-mapper	469596.HMPREF9488_01316	NA	NA
UHGV-0091102_16	Structural annotation	PF11836	NA	NA
UHGV-0091102_17	UniRef90	UniRef90_R5YR40	Major tail protein putative	NA
UHGV-0091102_17	eggNOG-mapper	1294142.CINTURNW_1696	Phage tail tube protein, TTP	NA
UHGV-0091102_17	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0091102_17	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0091102_18	PHROG	phrog_78	tail terminator	connector
UHGV-0091102_18	Structural annotation	PF05657	NA	NA
UHGV-0091102_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091102_19	UniRef90	UniRef90_R5ZK28	HK97 gp10 family phage protein	NA
UHGV-0091102_19	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0091102_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091102_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0091102_19	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0091102_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0091102_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0091102_21	Structural annotation	PF05135	NA	NA
UHGV-0091102_23	PHROG	phrog_267	major head protein	head and packaging
UHGV-0091102_23	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-0091102_23	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0091102_23	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0091102_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0091102_24	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0091102_24	UniRef90	UniRef90_UPI000F53BD28	NA	NA
UHGV-0091102_24	eggNOG-mapper	936154.STP_1289	NA	NA
UHGV-0091102_24	Pfam	PF14265	NA	DUF4355
UHGV-0091102_24	Structural annotation	PF14265	NA	NA
UHGV-0091102_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0091102_25	UniRef90	UniRef90_R5YXK3	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-0091102_25	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0091102_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0091102_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0091102_25	COG	COG2369	NA	NA
UHGV-0091102_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0091102_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0091102_26	UniRef90	UniRef90_R5YR52	Phage portal protein SPP1 family	NA
UHGV-0091102_26	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0091102_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0091102_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0091102_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091102_27	PHROG	phrog_6672	terminase large subunit	head and packaging
UHGV-0091102_27	UniRef90	UniRef90_UPI000A6F0F09	terminase large subunit	NA
UHGV-0091102_27	eggNOG-mapper	160799.PBOR_24115	Terminase RNAseH like domain	NA
UHGV-0091102_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091102_27	Structural annotation	PF17288	NA	NA
UHGV-0091102_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091102_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0091102_28	UniRef90	UniRef90_A0A173W6A0	Phage terminase, large subunit, PBSX family	NA
UHGV-0091102_28	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0091102_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0091102_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0091102_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091102_28	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0091102_29	PHROG	phrog_2412	NA	unknown function
UHGV-0091102_29	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0091102_29	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0091102_29	Structural annotation	PF18932	NA	NA
UHGV-0091102_30	Structural annotation	PF15887, COG4307	NA	NA
UHGV-0091102_34	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0091102_34	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-0091102_34	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0091102_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0091102_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0091102_34	Pfam	PF14386	NA	DUF4417
UHGV-0091102_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0091102_34	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0091102_35	PHROG	phrog_1233	NA	unknown function
UHGV-0091102_35	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0091102_35	Structural annotation	PF13058	NA	NA
UHGV-0091102_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091102_36	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-0091102_36	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0091102_36	Structural annotation	PF07374, MF_00674, TIGR02984, COG1342	NA	NA
UHGV-0091102_37	PHROG	phrog_20593	NA	unknown function
UHGV-0091102_42	PHROG	phrog_21026	NA	unknown function
UHGV-0091102_44	Structural annotation	PF04936	NA	NA
UHGV-0091102_45	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0091102_46	eggNOG-mapper	428127.EUBDOL_01513	NA	NA
UHGV-0091102_47	PHROG	phrog_17690	NA	unknown function
UHGV-0091102_47	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0091102_47	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0091102_49	PHROG	phrog_20532	NA	unknown function
UHGV-0091102_49	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0091102_49	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA