UHGV-0091160

Genome information

Genome length 34,011 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091160
vOTU ID	vOTU-045309
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_184393
BioSample	SAMEA3449284
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.07
Jumbo phage	No

Genome content
Genome length	34,011 bps
GC content	40.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.55%
Average CDS length	657.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091160_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0091160_1	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0091160_1	UniRef90	UniRef90_R6Z5S7	HTH cro/C1-type domain-containing protein	NA
UHGV-0091160_1	eggNOG-mapper	411470.RUMGNA_02090	NA	NA
UHGV-0091160_1	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0091160_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091160_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0091160_2	AcrCatalog	cluster_86620	NA	NA
UHGV-0091160_3	PHROG	phrog_1220	head protein	head and packaging
UHGV-0091160_3	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0091160_3	Structural annotation	PF20747	NA	NA
UHGV-0091160_4	PHROG	phrog_538	minor tail protein	tail
UHGV-0091160_4	UniRef90	UniRef90_A0A843FNJ4	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0091160_4	eggNOG-mapper	428125.CLOLEP_01424	NA	NA
UHGV-0091160_4	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0091160_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091160_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091160_5	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-0091160_5	eggNOG-mapper	411460.RUMTOR_01334	COG NOG18823 non supervised orthologous group	NA
UHGV-0091160_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0091160_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091160_5	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0091160_6	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0091160_6	PHROG	phrog_23464	NA	unknown function
UHGV-0091160_6	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0091160_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0091160_6	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0091160_8	PHROG	phrog_88	major tail protein	tail
UHGV-0091160_8	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0091160_8	eggNOG-mapper	1120971.AUCA01000037_gene2904	Phage tail tube protein	NA
UHGV-0091160_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091160_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0091160_9	Structural annotation	PF05657	NA	NA
UHGV-0091160_10	Structural annotation	TIGR01725	NA	NA
UHGV-0091160_11	UniRef90	UniRef90_R6Z5T8	Putative phage head-tail adaptor	NA
UHGV-0091160_11	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0091160_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0091160_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0091160_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091160_12	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0091160_12	eggNOG-mapper	1196322.A370_05715	NA	NA
UHGV-0091160_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0091160_12	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0091160_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091160_13	UniRef90	UniRef90_R6YY31	Phage major capsid protein HK97 family	NA
UHGV-0091160_13	eggNOG-mapper	1536769.P40081_01075	Phage capsid family	NA
UHGV-0091160_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091160_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091160_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091160_13	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091160_14	KOfam	K06904	NA	NA
UHGV-0091160_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0091160_14	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-0091160_14	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0091160_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0091160_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0091160_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0091160_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0091160_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091160_15	UniRef90	UniRef90_R6Z5U3	Phage portal protein	NA
UHGV-0091160_15	eggNOG-mapper	293826.Amet_2412	Portal protein	NA
UHGV-0091160_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091160_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091160_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091160_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091160_16	UniRef90	UniRef90_R7A0H4	Terminase	NA
UHGV-0091160_16	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0091160_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0091160_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091160_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091160_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0091160_21	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0091160_21	UniRef90	UniRef90_R6Z5U9	HNHc domain-containing protein	NA
UHGV-0091160_21	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0091160_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0091160_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091160_21	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0091160_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0091160_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0091160_22	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0091160_22	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0091160_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0091160_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0091160_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0091160_23	PHROG	phrog_14030	NA	unknown function
UHGV-0091160_23	UniRef90	UniRef90_R6YJZ3	SH3b domain-containing protein	NA
UHGV-0091160_23	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-0091160_23	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0091160_23	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0091160_24	PHROG	phrog_1863	NA	unknown function
UHGV-0091160_24	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0091160_25	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0091160_27	UniRef90	UniRef90_A0A3R6B3D9	XRE family transcriptional regulator	NA
UHGV-0091160_27	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0091160_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091160_27	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0091160_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091160_28	UniRef90	UniRef90_R7F9V4	Putative RNA polymerase sigma factor sigma-F	NA
UHGV-0091160_28	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0091160_28	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0091160_28	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0091160_31	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0091160_31	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0091160_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0091160_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0091160_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0091160_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0091160_32	UniRef90	UniRef90_R7A0J0	AAA_31 domain-containing protein	NA
UHGV-0091160_32	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0091160_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0091160_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0091160_32	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0091160_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0091160_33	PHROG	phrog_824	NA	unknown function
UHGV-0091160_33	UniRef90	UniRef90_R6YK17	VRR-NUC domain-containing protein	NA
UHGV-0091160_33	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0091160_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-0091160_34	PHROG	phrog_824	NA	unknown function
UHGV-0091160_34	UniRef90	UniRef90_R6YK17	VRR-NUC domain-containing protein	NA
UHGV-0091160_34	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0091160_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0091160_34	Structural annotation	PF08774	NA	NA
UHGV-0091160_35	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0091160_35	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0091160_35	UniRef90	UniRef90_A0A3R6LQI5	HD domain-containing protein	NA
UHGV-0091160_35	eggNOG-mapper	97139.C824_00737	PFAM HD domain	NA
UHGV-0091160_35	Pfam	PF14359	NA	DUF4406
UHGV-0091160_35	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0091160_36	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091160_36	UniRef90	UniRef90_R7CC66	NUMOD4 domain-containing protein	NA
UHGV-0091160_36	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0091160_36	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0091160_36	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0091160_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0091160_36	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0091160_37	eggNOG-mapper	1235802.C823_05483	NA	NA
UHGV-0091160_38	KOfam	K24451	zim; modification methylase	NA
UHGV-0091160_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0091160_38	UniRef90	UniRef90_R7A0J6	DNA methylase family protein	NA
UHGV-0091160_38	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0091160_38	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0091160_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0091160_38	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0091160_38	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0091160_39	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0091160_39	UniRef90	UniRef90_R6YK23	Putative RNA polymerase sigma factor	NA
UHGV-0091160_39	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0091160_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0091160_41	eggNOG-mapper	97139.C824_00747	NA	NA
UHGV-0091160_41	Structural annotation	PF21578	NA	NA
UHGV-0091160_45	PHROG	phrog_750	NA	unknown function
UHGV-0091160_45	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0091160_45	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0091160_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0091160_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091160_47	UniRef90	UniRef90_R6YK35	XRE family Transcriptional regulator	NA
UHGV-0091160_47	eggNOG-mapper	742740.HMPREF9474_04328	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091160_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091160_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0091160_47	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0091160_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0091160_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0091160_48	UniRef90	UniRef90_R6YY58	Resolvase N-terminal domain	NA
UHGV-0091160_48	eggNOG-mapper	1232453.BAIF02000057_gene1119	Resolvase, N terminal domain	NA
UHGV-0091160_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0091160_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0091160_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0091160_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0091160_48	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA