UHGV-0091178

Genome information

vOTU vOTU-020195

Genome length 27,712 bps

CDS count 30

Completeness 72.35% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091178
vOTU ID	vOTU-020195
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_185786
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-0.91
Jumbo phage	No

Genome content
Genome length	27,712 bps
GC content	38.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	90.99%
Average CDS length	843.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091178_1	KOfam	K07486	K07486; transposase	NA
UHGV-0091178_1	PHROG	phrog_2199	transposase	integration and excision
UHGV-0091178_1	UniRef90	UniRef90_A0A173SFT9	IS110 family transposase	NA
UHGV-0091178_1	eggNOG-mapper	1280676.AUJO01000016_gene1135	Transposase	NA
UHGV-0091178_1	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0091178_1	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0091178_1	NCBIFam	NF033542.1	IS110 family transposase	NA
UHGV-0091178_1	COG	COG3547	Transposase	NA
UHGV-0091178_1	Structural annotation	PF01548, PF02371, MF_00651, NF033542, COG3547	NA	NA
UHGV-0091178_2	KOfam	K00703	glgA; starch synthase [EC:2.4.1.21]	NA
UHGV-0091178_2	UniRef90	UniRef90_A0A174TRC5	Glycogen synthase	NA
UHGV-0091178_2	eggNOG-mapper	411461.DORFOR_01039	Synthesizes alpha-1,4-glucan chains using ADP-glucose	NA
UHGV-0091178_2	Pfam	PF08323	Starch synthase catalytic domain	Glyco_transf_5
UHGV-0091178_2	Pfam	PF00534	Glycosyl transferases group 1	Glycos_transf_1
UHGV-0091178_2	NCBIFam	TIGR02095.1	glycogen/starch synthase, ADP-glucose type	NA
UHGV-0091178_2	COG	COG0297	Glycogen synthase	NA
UHGV-0091178_2	HAMAP	MF_00484	Glycogen synthase [glgA]	NA
UHGV-0091178_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091178_3	PHROG	phrog_435	endolysin	lysis
UHGV-0091178_3	UniRef90	UniRef90_UPI000985947E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091178_3	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0091178_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0091178_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091178_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0091178_4	PHROG	phrog_199	holin	lysis
UHGV-0091178_4	UniRef90	UniRef90_A0A1Q2CAY6	Holin	NA
UHGV-0091178_4	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0091178_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0091178_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0091178_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0091178_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0091178_5	PHROG	phrog_2566	NA	unknown function
UHGV-0091178_5	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0091178_6	PHROG	phrog_16267	NA	unknown function
UHGV-0091178_6	UniRef90	UniRef90_A0A417V835	Peptidase S74 domain-containing protein	NA
UHGV-0091178_6	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0091178_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0091178_6	COG	COG4926	Phage-related protein	NA
UHGV-0091178_7	PHROG	phrog_1401	NA	unknown function
UHGV-0091178_7	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0091178_7	Structural annotation	PF07761	NA	NA
UHGV-0091178_8	PHROG	phrog_1194	NA	unknown function
UHGV-0091178_8	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0091178_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0091178_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0091178_9	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0091178_9	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0091178_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0091178_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0091178_10	PHROG	phrog_8355	NA	unknown function
UHGV-0091178_10	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0091178_10	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0091178_11	PHROG	phrog_8300	NA	unknown function
UHGV-0091178_11	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0091178_11	Structural annotation	PF06854	NA	NA
UHGV-0091178_12	PHROG	phrog_820	major tail protein	tail
UHGV-0091178_12	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0091178_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0091178_13	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0091178_13	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0091178_13	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0091178_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0091178_13	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0091178_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0091178_14	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0091178_15	PHROG	phrog_8710	NA	unknown function
UHGV-0091178_15	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0091178_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0091178_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0091178_16	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0091178_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0091178_17	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0091178_17	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0091178_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0091178_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0091178_18	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0091178_19	Structural annotation	PF20873	NA	NA
UHGV-0091178_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0091178_21	UniRef90	UniRef90_UPI0015715021	minor capsid protein	NA
UHGV-0091178_21	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0091178_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0091178_21	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0091178_21	Structural annotation	PF06152	NA	NA
UHGV-0091178_22	PHROG	phrog_25639	NA	unknown function
UHGV-0091178_22	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0091178_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0091178_23	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-0091178_23	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0091178_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0091178_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091178_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0091178_24	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0091178_24	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0091178_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091178_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0091178_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0091178_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0091178_25	UniRef90	UniRef90_A0A417V811	Terminase small subunit	NA
UHGV-0091178_25	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0091178_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0091178_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0091178_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0091178_26	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0091178_26	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0091178_26	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0091178_27	PHROG	phrog_918	NA	unknown function
UHGV-0091178_27	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0091178_27	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0091178_27	Pfam	PF19791	NA	DUF6275
UHGV-0091178_27	Structural annotation	PF19791	NA	NA
UHGV-0091178_28	PHROG	phrog_1048	NA	unknown function
UHGV-0091178_28	UniRef90	UniRef90_A0A374AMV7	NA	NA
UHGV-0091178_28	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0091178_28	Pfam	PF11195	NA	DUF2829
UHGV-0091178_28	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0091178_28	Structural annotation	PF11195	NA	NA
UHGV-0091178_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091178_30	UniRef90	UniRef90_UPI001CD68077	NA	NA
UHGV-0091178_30	eggNOG-mapper	478749.BRYFOR_07600	sigma factor activity	NA
UHGV-0091178_30	Pfam	PF07374	NA	DUF1492
UHGV-0091178_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0091178_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA