UHGV-0091204

Genome information

Genome length 32,490 bps

CDS count 47

Completeness 72.28% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091204
vOTU ID	vOTU-036147
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170572
BioSample	SAMEA3136673
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.25
Jumbo phage	No

Genome content
Genome length	32,490 bps
GC content	33.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	87.38%
Average CDS length	611.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091204_1	UniRef90	UniRef90_A0A412I387	NA	NA
UHGV-0091204_1	eggNOG-mapper	518637.EUBIFOR_01009	NA	NA
UHGV-0091204_1	PADLOC	drt-cluster579	DRT	DRT
UHGV-0091204_1	Pfam	PF08902	NA	DUF1848
UHGV-0091204_1	COG	COG1533	DNA repair photolyase	NA
UHGV-0091204_1	Structural annotation	PF08902, MF_01873, NF033719, COG0820	NA	NA
UHGV-0091204_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091204_2	PHROG	phrog_7698	endolysin	lysis
UHGV-0091204_2	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091204_2	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0091204_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091204_2	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0091204_2	Structural annotation	COG5632	NA	NA
UHGV-0091204_4	PHROG	phrog_443	holin	lysis
UHGV-0091204_4	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0091204_4	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0091204_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0091204_4	Structural annotation	PF16945	NA	NA
UHGV-0091204_6	PHROG	phrog_20016	NA	unknown function
UHGV-0091204_6	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0091204_6	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0091204_6	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-0091204_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0091204_7	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0091204_7	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0091204_12	PHROG	phrog_24451	NA	unknown function
UHGV-0091204_12	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0091204_13	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0091204_13	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-0091204_13	Structural annotation	PF03425, NF033675	NA	NA
UHGV-0091204_14	PHROG	phrog_24103	NA	unknown function
UHGV-0091204_14	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0091204_16	PHROG	phrog_15594	NA	unknown function
UHGV-0091204_16	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0091204_16	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0091204_17	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0091204_18	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0091204_19	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0091204_20	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0091204_20	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0091204_21	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091204_21	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0091204_21	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0091204_21	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091204_21	COG	COG4926	Phage-related protein	NA
UHGV-0091204_21	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091204_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091204_22	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0091204_22	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0091204_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0091204_22	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0091204_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091204_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091204_23	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0091204_23	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0091204_23	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0091204_23	eggNOG-mapper	999425.HMPREF9186_02045	Phage-related minor tail protein	NA
UHGV-0091204_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0091204_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0091204_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0091204_23	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0091204_24	PHROG	phrog_709	NA	unknown function
UHGV-0091204_24	Structural annotation	PF11836	NA	NA
UHGV-0091204_25	PHROG	phrog_88	major tail protein	tail
UHGV-0091204_25	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0091204_25	eggNOG-mapper	1033744.CAEL01000029_gene1276	Phage major tail protein, phi13 family	NA
UHGV-0091204_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091204_25	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0091204_26	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0091204_26	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0091204_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091204_26	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0091204_27	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0091204_28	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0091204_28	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0091204_28	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0091204_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0091204_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0091204_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091204_29	PHROG	phrog_5223	neck protein	connector
UHGV-0091204_29	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0091204_29	Structural annotation	TIGR01560	NA	NA
UHGV-0091204_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091204_30	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0091204_30	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0091204_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091204_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091204_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091204_30	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091204_31	KOfam	K06904	NA	NA
UHGV-0091204_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0091204_31	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0091204_31	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0091204_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0091204_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0091204_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0091204_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0091204_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091204_32	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0091204_32	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0091204_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091204_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091204_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091204_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091204_33	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0091204_33	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0091204_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0091204_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091204_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091204_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091204_34	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0091204_34	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0091204_34	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0091204_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0091204_34	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0091204_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0091204_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091204_35	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0091204_35	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0091204_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0091204_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091204_38	COG	COG4842	Secreted virulence factor YukE/EsxA, WXG100 family	NA
UHGV-0091204_41	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0091204_41	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0091204_41	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0091204_42	Structural annotation	PF10879	NA	NA
UHGV-0091204_43	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0091204_43	Pfam	PF07374	NA	DUF1492
UHGV-0091204_43	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0091204_46	PHROG	phrog_30559	NA	unknown function