UHGV-0091218

Genome information

Genome length 36,467 bps

CDS count 63

Completeness 95.06% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091218
vOTU ID	vOTU-068640
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_189341
BioSample	SAMEA3449187
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.91
Jumbo phage	No

Genome content
Genome length	36,467 bps
GC content	58.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.85%
Average CDS length	535.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091218_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0091218_1	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0091218_1	eggNOG-mapper	202752.JL53_00755	Phage terminase, small subunit	NA
UHGV-0091218_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0091218_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0091218_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091218_2	UniRef90	UniRef90_UPI0018737C02	terminase large subunit	NA
UHGV-0091218_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0091218_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091218_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091218_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091218_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091218_3	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0091218_3	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0091218_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091218_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0091218_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091218_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091218_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0091218_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0091218_4	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0091218_4	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0091218_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0091218_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0091218_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0091218_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091218_5	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0091218_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0091218_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091218_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0091218_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091218_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091218_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091218_6	PHROG	phrog_749	NA	unknown function
UHGV-0091218_6	eggNOG-mapper	86416.Clopa_0342	NA	NA
UHGV-0091218_7	PHROG	phrog_19734	NA	unknown function
UHGV-0091218_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0091218_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0091218_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091218_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0091218_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0091218_9	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0091218_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0091218_9	Structural annotation	TIGR01725	NA	NA
UHGV-0091218_10	PHROG	phrog_88	major tail protein	tail
UHGV-0091218_10	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0091218_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0091218_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091218_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0091218_11	PHROG	phrog_2115	tail protein	tail
UHGV-0091218_11	eggNOG-mapper	548479.HMPREF0573_11230	NA	NA
UHGV-0091218_11	Structural annotation	PF11836	NA	NA
UHGV-0091218_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0091218_13	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-0091218_13	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0091218_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0091218_13	Structural annotation	PF20155, MF_04138, COG5280	NA	NA
UHGV-0091218_14	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0091218_14	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0091218_15	PHROG	phrog_13879	NA	unknown function
UHGV-0091218_15	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0091218_15	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0091218_17	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0091218_17	PHROG	phrog_11157	NA	unknown function
UHGV-0091218_17	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0091218_17	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0091218_17	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0091218_17	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0091218_17	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0091218_17	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0091218_18	PHROG	phrog_18725	NA	unknown function
UHGV-0091218_18	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0091218_18	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0091218_19	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0091218_21	UniRef90	UniRef90_A0A356L0N0	XkdX family protein	NA
UHGV-0091218_21	eggNOG-mapper	742740.HMPREF9474_02255	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0091218_21	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0091218_21	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0091218_22	PHROG	phrog_4105	NA	unknown function
UHGV-0091218_22	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0091218_23	PHROG	phrog_13256	NA	unknown function
UHGV-0091218_23	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0091218_25	PHROG	phrog_18955	NA	unknown function
UHGV-0091218_25	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0091218_25	eggNOG-mapper	868595.Desca_2581	exopolysaccharide biosynthesis protein	NA
UHGV-0091218_25	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0091218_25	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0091218_25	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0091218_26	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0091218_26	PHROG	phrog_894	endolysin	lysis
UHGV-0091218_26	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0091218_26	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0091218_26	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0091218_26	COG	COG3108	NA	NA
UHGV-0091218_26	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0091218_27	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-0091218_30	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0091218_30	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091218_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091218_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0091218_30	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0091218_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0091218_37	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0091218_38	KOfam	K14059	int; integrase	NA
UHGV-0091218_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0091218_38	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0091218_38	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0091218_38	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0091218_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091218_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091218_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0091218_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091218_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091218_40	PHROG	phrog_17982	NA	unknown function
UHGV-0091218_40	UniRef90	UniRef90_A0A7X3DKW5	NA	NA
UHGV-0091218_40	eggNOG-mapper	869209.Tresu_0105	NA	NA
UHGV-0091218_40	Pfam	PF14020	NA	DUF4236
UHGV-0091218_40	Structural annotation	PF14020	NA	NA
UHGV-0091218_41	UniRef90	UniRef90_UPI001956EF77	stalk domain-containing protein	NA
UHGV-0091218_41	eggNOG-mapper	1226322.HMPREF1545_01476	Copper amine oxidase N-terminal domain	NA
UHGV-0091218_41	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0091218_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0091218_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091218_43	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0091218_43	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0091218_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091218_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091218_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0091218_44	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0091218_45	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0091218_45	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0091218_45	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091218_45	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0091218_45	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0091218_45	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0091218_46	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0091218_46	UniRef90	UniRef90_UPI001ADEF5BC	helix-turn-helix domain-containing protein	NA
UHGV-0091218_46	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0091218_46	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0091218_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0091218_46	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0091218_47	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0091218_47	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0091218_47	UniRef90	UniRef90_UPI00164C2AE4	AAA family ATPase	NA
UHGV-0091218_47	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0091218_47	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0091218_47	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0091218_47	COG	COG0305	Replicative DNA helicase	NA
UHGV-0091218_47	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0091218_49	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0091218_49	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0091218_49	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0091218_49	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0091218_49	Pfam	PF13614	AAA domain	AAA_31
UHGV-0091218_49	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0091218_49	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0091218_50	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0091218_50	PHROG	phrog_27290	NA	unknown function
UHGV-0091218_50	UniRef90	UniRef90_UPI00195EFCA8	helix-turn-helix domain-containing protein	NA
UHGV-0091218_50	eggNOG-mapper	742738.HMPREF9460_04281	ParB-like nuclease domain	NA
UHGV-0091218_50	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0091218_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091218_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0091218_50	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0091218_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0091218_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091218_54	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0091218_54	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0091218_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0091218_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0091218_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0091218_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0091218_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0091218_55	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0091218_55	Pfam	PF04448	NA	DUF551
UHGV-0091218_55	Structural annotation	NF041588	NA	NA
UHGV-0091218_60	PHROG	phrog_22543	NA	unknown function
UHGV-0091218_60	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0091218_62	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0091218_62	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0091218_62	Structural annotation	PF05840	NA	NA
UHGV-0091218_63	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091218_63	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0091218_63	eggNOG-mapper	574375.BAGA_00230	HNH endonuclease	NA
UHGV-0091218_63	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA