UHGV-0091243

Genome information

Genome length 40,267 bps

CDS count 60

Completeness 98.98% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091243
vOTU ID	vOTU-069287
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_174975
BioSample	SAMEA3360679
Country	Bangladesh
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.6
Jumbo phage	No

Genome content
Genome length	40,267 bps
GC content	52.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.96%
Average CDS length	608.15 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091243_1	PHROG	phrog_16490	NA	unknown function
UHGV-0091243_1	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0091243_2	eggNOG-mapper	658655.HMPREF0988_00916	NA	NA
UHGV-0091243_3	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0091243_4	KOfam	K14059	int; integrase	NA
UHGV-0091243_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0091243_4	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0091243_4	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0091243_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091243_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091243_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0091243_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0091243_5	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0091243_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091243_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091243_5	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0091243_8	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0091243_8	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0091243_8	UniRef90	UniRef90_A0A3C0J9N6	Exonuclease domain-containing protein	NA
UHGV-0091243_8	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0091243_8	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0091243_8	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0091243_8	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0091243_8	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0091243_8	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-0091243_11	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0091243_11	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0091243_11	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0091243_12	UniRef90	UniRef90_UPI000BEF0F65	helix-turn-helix transcriptional regulator	NA
UHGV-0091243_12	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0091243_18	Structural annotation	PF10346, MF_00337, NF010671	NA	NA
UHGV-0091243_21	PHROG	phrog_14970	NA	unknown function
UHGV-0091243_21	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0091243_21	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0091243_22	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0091243_22	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0091243_22	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0091243_23	PHROG	phrog_7566	NA	unknown function
UHGV-0091243_23	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0091243_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0091243_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091243_24	UniRef90	UniRef90_A0A2A7ALU9	Single-stranded DNA-binding protein	NA
UHGV-0091243_24	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0091243_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0091243_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0091243_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0091243_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0091243_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0091243_25	PHROG	phrog_6969	NA	unknown function
UHGV-0091243_25	eggNOG-mapper	748224.HMPREF9436_00735	NA	NA
UHGV-0091243_25	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0091243_25	Pfam	PF19481	NA	DUF6017
UHGV-0091243_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0091243_25	Structural annotation	PF19481, PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0091243_26	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0091243_26	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0091243_26	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0091243_26	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0091243_26	Pfam	PF13614	AAA domain	AAA_31
UHGV-0091243_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0091243_26	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0091243_27	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0091243_28	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0091243_28	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0091243_28	UniRef90	UniRef90_A0A2A7B6Q0	ParB domain-containing protein	NA
UHGV-0091243_28	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0091243_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0091243_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0091243_28	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0091243_29	Structural annotation	PF04545	NA	NA
UHGV-0091243_35	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0091243_35	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0091243_35	UniRef90	UniRef90_UPI0011DC86C4	N-6 DNA methylase	NA
UHGV-0091243_35	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0091243_35	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0091243_35	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0091243_35	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0091243_35	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0091243_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091243_36	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0091243_36	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0091243_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0091243_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091243_37	PHROG	phrog_13845	NA	unknown function
UHGV-0091243_37	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0091243_37	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0091243_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091243_38	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0091243_38	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0091243_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091243_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091243_38	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091243_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091243_39	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0091243_39	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0091243_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091243_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0091243_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091243_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091243_40	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0091243_40	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0091243_40	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0091243_40	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0091243_40	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0091243_40	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0091243_40	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0091243_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091243_41	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0091243_41	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0091243_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091243_41	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0091243_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091243_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091243_41	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091243_42	PHROG	phrog_749	NA	unknown function
UHGV-0091243_42	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0091243_43	PHROG	phrog_19734	NA	unknown function
UHGV-0091243_43	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0091243_43	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0091243_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091243_44	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0091243_44	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0091243_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091243_45	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0091243_45	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0091243_45	Structural annotation	TIGR01725	NA	NA
UHGV-0091243_46	PHROG	phrog_88	major tail protein	tail
UHGV-0091243_46	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0091243_46	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0091243_46	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091243_46	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0091243_49	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0091243_49	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0091243_49	eggNOG-mapper	1224164.B843_03450	Tail protein	NA
UHGV-0091243_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0091243_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0091243_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0091243_49	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0091243_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091243_50	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0091243_50	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0091243_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0091243_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091243_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091243_51	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091243_51	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0091243_51	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0091243_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091243_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091243_51	COG	COG4926	Phage-related protein	NA
UHGV-0091243_51	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091243_54	KOfam	K07273	acm; lysozyme	NA
UHGV-0091243_54	PHROG	phrog_291	endolysin	lysis
UHGV-0091243_54	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0091243_54	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0091243_54	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0091243_54	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0091243_54	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0091243_55	PHROG	phrog_1863	NA	unknown function
UHGV-0091243_55	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0091243_56	PHROG	phrog_15303	NA	unknown function
UHGV-0091243_58	eggNOG-mapper	1384065.JAGS01000001_gene3265	sequence-specific DNA binding	NA
UHGV-0091243_58	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0091243_58	Structural annotation	PF13560, NF040522	NA	NA