UHGV-0091340

Genome information

Genome length 31,704 bps

CDS count 49

Completeness 94.23% (high-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091340
vOTU ID	vOTU-073855
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_181340
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.16
Jumbo phage	No

Genome content
Genome length	31,704 bps
GC content	38.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	88.71%
Average CDS length	576.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091340_1	UniRef90	UniRef90_R7EVG2	Thymidylate synthase ThyX	NA
UHGV-0091340_1	eggNOG-mapper	1235793.C809_02394	NA	NA
UHGV-0091340_1	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0091340_1	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0091340_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091340_3	UniRef90	UniRef90_UPI001BB0884F	NA	NA
UHGV-0091340_3	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0091340_3	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0091340_4	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0091340_4	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0091340_4	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0091340_4	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0091340_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0091340_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091340_5	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0091340_5	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0091340_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0091340_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091340_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091340_5	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0091340_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091340_6	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0091340_6	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0091340_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091340_6	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0091340_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091340_6	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0091340_7	KOfam	K06904	NA	NA
UHGV-0091340_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0091340_7	UniRef90	UniRef90_A0A3D2W384	HK97 family phage prohead protease	NA
UHGV-0091340_7	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0091340_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0091340_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0091340_7	COG	COG3740	Phage head maturation protease	NA
UHGV-0091340_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0091340_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091340_8	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-0091340_8	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0091340_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091340_8	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0091340_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091340_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091340_8	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091340_9	PHROG	phrog_2550	NA	unknown function
UHGV-0091340_9	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0091340_9	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0091340_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0091340_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0091340_10	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0091340_10	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0091340_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091340_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091340_11	UniRef90	UniRef90_UPI0019581735	HK97 gp10 family phage protein	NA
UHGV-0091340_11	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0091340_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091340_11	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0091340_12	PHROG	phrog_78	tail terminator	connector
UHGV-0091340_12	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0091340_12	eggNOG-mapper	471875.RUMLAC_02244	NA	NA
UHGV-0091340_12	Structural annotation	PF20765	NA	NA
UHGV-0091340_13	PHROG	phrog_88	major tail protein	tail
UHGV-0091340_13	UniRef90	UniRef90_R9N908	Phi13 family phage major tail protein	NA
UHGV-0091340_13	eggNOG-mapper	1235798.C817_02573	phage major tail protein, phi13 family	NA
UHGV-0091340_13	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0091340_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091340_13	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0091340_14	PHROG	phrog_709	NA	unknown function
UHGV-0091340_14	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0091340_14	Structural annotation	PF11836	NA	NA
UHGV-0091340_15	PHROG	phrog_3033	NA	unknown function
UHGV-0091340_15	UniRef90	UniRef90_A0A174UN01	Phage-like protein	NA
UHGV-0091340_15	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0091340_16	PHROG	phrog_23464	NA	unknown function
UHGV-0091340_16	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0091340_16	eggNOG-mapper	1121428.DESHY_20147___1	TIGRFAM phage tail tape measure protein, TP901 family, core region	NA
UHGV-0091340_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0091340_16	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0091340_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091340_17	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0091340_17	eggNOG-mapper	1497679.EP56_07715	tail component	NA
UHGV-0091340_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091340_17	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091340_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091340_18	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0091340_18	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0091340_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091340_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091340_18	COG	COG4926	Phage-related protein	NA
UHGV-0091340_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091340_19	PHROG	phrog_24267	NA	unknown function
UHGV-0091340_19	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-0091340_19	eggNOG-mapper	33035.JPJF01000023_gene3223	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0091340_19	COG	COG4675	Phage tail collar domain	NA
UHGV-0091340_19	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0091340_21	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091340_21	PHROG	phrog_7698	endolysin	lysis
UHGV-0091340_21	UniRef90	UniRef90_UPI0009861559	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091340_21	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091340_21	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091340_21	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0091340_21	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0091340_22	PHROG	phrog_4105	NA	unknown function
UHGV-0091340_23	PHROG	phrog_1129	holin	lysis
UHGV-0091340_23	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0091340_23	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0091340_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0091340_23	Structural annotation	PF16079	NA	NA
UHGV-0091340_24	PHROG	phrog_3291	NA	unknown function
UHGV-0091340_24	eggNOG-mapper	642492.Clole_1881	NA	NA
UHGV-0091340_25	PHROG	phrog_1758	acetyltransferase	other
UHGV-0091340_25	UniRef90	UniRef90_A0A7G5N3M6	N-acetyltransferase	NA
UHGV-0091340_25	eggNOG-mapper	272563.CD630_29260	acetyltransferase	NA
UHGV-0091340_25	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0091340_25	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-0091340_26	eggNOG-mapper	1235802.C823_02864	NA	NA
UHGV-0091340_27	eggNOG-mapper	1235800.C819_03386	NA	NA
UHGV-0091340_27	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-0091340_30	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0091340_30	UniRef90	UniRef90_C0E8Y6	HTH cro/C1-type domain-containing protein	NA
UHGV-0091340_30	eggNOG-mapper	537013.CLOSTMETH_00281	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0091340_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091340_30	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0091340_32	KOfam	K14059	int; integrase	NA
UHGV-0091340_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0091340_32	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-0091340_32	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0091340_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0091340_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091340_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091340_32	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0091340_33	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0091340_33	UniRef90	UniRef90_A0A1M5ZIM7	Abortive infection bacteriophage resistance protein	NA
UHGV-0091340_33	eggNOG-mapper	1045858.Bint_2390	Abi-like protein	NA
UHGV-0091340_33	PADLOC	AbiD	AbiD	Abi
UHGV-0091340_33	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0091340_33	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0091340_33	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0091340_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0091340_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0091340_34	UniRef90	UniRef90_A0A1Y4J566	HTH cro/C1-type domain-containing protein	NA
UHGV-0091340_34	eggNOG-mapper	1118057.CAGX01000020_gene1659	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0091340_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0091340_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091340_34	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0091340_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0091340_34	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0091340_35	UniRef90	UniRef90_UPI001B1B66C7	helix-turn-helix transcriptional regulator	NA
UHGV-0091340_35	eggNOG-mapper	279010.BL00668	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091340_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091340_35	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091340_37	PHROG	phrog_9607	NA	unknown function
UHGV-0091340_37	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0091340_39	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0091340_39	Structural annotation	PF20432, MF_00535, NF041951, COG1396	NA	NA
UHGV-0091340_41	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0091340_41	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0091340_41	UniRef90	UniRef90_UPI000E09A8FA	MT-A70 family methyltransferase	NA
UHGV-0091340_41	eggNOG-mapper	1462527.CCDM010000006_gene4447	Belongs to the MT-A70-like family	NA
UHGV-0091340_41	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0091340_41	Pfam	PF05063	MT-A70	MT-A70
UHGV-0091340_41	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0091340_41	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0091340_42	eggNOG-mapper	1223521.BBJX01000001_gene872	Flagellar Assembly Protein A	NA
UHGV-0091340_42	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-0091340_44	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091340_44	UniRef90	UniRef90_UPI00190EAB3F	ERF family protein	NA
UHGV-0091340_44	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0091340_44	Pfam	PF04404	ERF superfamily	ERF
UHGV-0091340_44	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0091340_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0091340_45	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0091340_45	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0091340_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0091340_46	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091340_46	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-0091340_46	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0091340_46	Pfam	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)	Paired_CXXCH_1
UHGV-0091340_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0091340_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091340_47	UniRef90	UniRef90_A0A4Z0YC28	Single-stranded DNA-binding protein	NA
UHGV-0091340_47	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0091340_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0091340_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0091340_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0091340_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0091340_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0091340_48	PHROG	phrog_2113	NA	unknown function
UHGV-0091340_48	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0091340_49	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0091340_49	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0091340_49	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0091340_49	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0091340_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0091340_49	Structural annotation	PF14297	NA	NA