UHGV-0091349

Genome information

Genome length 66,566 bps

CDS count 78

Completeness 99.90% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091349
vOTU ID	vOTU-073858
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_198136
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.98
Jumbo phage	No

Genome content
Genome length	66,566 bps
GC content	42.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	89.66%
Average CDS length	772.35 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091349_1	KOfam	K02477	K02477; two-component system, LytTR family, response regulator	NA
UHGV-0091349_1	UniRef90	UniRef90_UPI00189F24A6	LytTR family transcriptional regulator	NA
UHGV-0091349_1	eggNOG-mapper	435591.BDI_1033	LytTr DNA-binding domain	NA
UHGV-0091349_1	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0091349_1	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0091349_2	KOfam	K07678	barA, gacS, varS; two-component system, NarL family, sensor histidine kinase BarA [EC:2.7.13.3]	NA
UHGV-0091349_2	PHROG	phrog_857	NA	unknown function
UHGV-0091349_2	UniRef90	UniRef90_K6AYZ5	Histidine kinase domain-containing protein	NA
UHGV-0091349_2	eggNOG-mapper	435591.BDI_1032	NA	NA
UHGV-0091349_2	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-0091349_2	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-0091349_2	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0091349_4	UniRef90	UniRef90_A0A1Q6FH58	HTH cro/C1-type domain-containing protein	NA
UHGV-0091349_4	eggNOG-mapper	1121100.JCM6294_1580	NA	NA
UHGV-0091349_6	eggNOG-mapper	411477.PARMER_02101	NA	NA
UHGV-0091349_6	Structural annotation	PF20651	NA	NA
UHGV-0091349_7	eggNOG-mapper	1121098.HMPREF1534_01070	NA	NA
UHGV-0091349_7	Structural annotation	NF033787	NA	NA
UHGV-0091349_8	PHROG	phrog_3878	NA	unknown function
UHGV-0091349_8	UniRef90	UniRef90_Q5LCZ1	Putative membrane protein	NA
UHGV-0091349_8	eggNOG-mapper	272559.BF9343_2239	NA	NA
UHGV-0091349_11	PHROG	phrog_4433	NA	unknown function
UHGV-0091349_11	eggNOG-mapper	1287476.HMPREF1651_07170	DNA-templated transcription, initiation	NA
UHGV-0091349_11	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0091349_11	Structural annotation	NF000318	NA	NA
UHGV-0091349_13	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091349_13	UniRef90	UniRef90_A0A173VJD5	ERF superfamily	NA
UHGV-0091349_13	eggNOG-mapper	1408428.JNJP01000005_gene5	ERF superfamily	NA
UHGV-0091349_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0091349_13	Structural annotation	PF04404	NA	NA
UHGV-0091349_15	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0091349_15	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-0091349_16	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0091349_16	UniRef90	UniRef90_UPI00164A9C4B	NA	NA
UHGV-0091349_16	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0091349_16	Pfam	PF07105	NA	DUF1367
UHGV-0091349_16	Structural annotation	PF07105	NA	NA
UHGV-0091349_17	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091349_17	UniRef90	UniRef90_A0A173VHK3	NUMOD4 motif	NA
UHGV-0091349_17	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0091349_17	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0091349_17	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0091349_17	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0091349_17	Structural annotation	PF07463	NA	NA
UHGV-0091349_18	PHROG	phrog_19572	NA	unknown function
UHGV-0091349_18	UniRef90	UniRef90_A0A174LVG4	NA	NA
UHGV-0091349_18	eggNOG-mapper	1235803.C825_00367	Phage tail protein	NA
UHGV-0091349_18	Pfam	PF14902	NA	DUF4494
UHGV-0091349_18	Structural annotation	PF14902	NA	NA
UHGV-0091349_20	PHROG	phrog_200	lipoprotein	other
UHGV-0091349_20	UniRef90	UniRef90_UPI000E5006F6	SPFH domain-containing protein	NA
UHGV-0091349_20	eggNOG-mapper	742727.HMPREF9447_04889	SPFH Band 7 PHB domain protein	NA
UHGV-0091349_20	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0091349_20	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0091349_21	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0091349_21	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-0091349_23	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0091349_23	UniRef90	UniRef90_UPI001F23D6D5	NA	NA
UHGV-0091349_23	eggNOG-mapper	511437.Lbuc_1442	NA	NA
UHGV-0091349_23	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0091349_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0091349_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0091349_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0091349_24	UniRef90	UniRef90_D0TA50	ATPase_AAA_core domain-containing protein	NA
UHGV-0091349_24	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-0091349_24	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0091349_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0091349_24	Structural annotation	PF00308, MF_01919, NF005931, COG1484	NA	NA
UHGV-0091349_26	KOfam	K02078	acpP; acyl carrier protein	NA
UHGV-0091349_26	PHROG	phrog_5934	acyl carrier protein	moron, auxiliary metabolic gene and host takeover
UHGV-0091349_26	UniRef90	UniRef90_A0A496CV39	Acyl carrier protein	NA
UHGV-0091349_26	eggNOG-mapper	290315.Clim_0166	Carrier of the growing fatty acid chain in fatty acid biosynthesis	NA
UHGV-0091349_26	Pfam	PF00550	Phosphopantetheine attachment site	PP-binding
UHGV-0091349_26	NCBIFam	NF002148.0	acyl carrier protein	NA
UHGV-0091349_26	COG	COG0236	Acyl carrier protein	NA
UHGV-0091349_26	HAMAP	MF_01217	Acyl carrier protein [acpP]	NA
UHGV-0091349_26	Structural annotation	PF14573, MF_01217, NF002150, COG0236	NA	NA
UHGV-0091349_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0091349_28	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0091349_28	UniRef90	UniRef90_A0A496CUZ6	Methyltransferase	NA
UHGV-0091349_28	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0091349_28	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0091349_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0091349_28	COG	COG0863	DNA modification methylase	NA
UHGV-0091349_28	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0091349_30	PHROG	phrog_20542	NA	unknown function
UHGV-0091349_30	eggNOG-mapper	216591.BCAM1034	NA	NA
UHGV-0091349_32	PHROG	phrog_874	NA	unknown function
UHGV-0091349_32	eggNOG-mapper	1122973.KB904232_gene340	NA	NA
UHGV-0091349_32	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0091349_34	PHROG	phrog_98	NA	unknown function
UHGV-0091349_34	UniRef90	UniRef90_E5CG87	YopX domain-containing protein	NA
UHGV-0091349_34	eggNOG-mapper	742727.HMPREF9447_04806	YopX protein	NA
UHGV-0091349_34	Pfam	PF09643	YopX protein	YopX
UHGV-0091349_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0091349_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0091349_35	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0091349_35	PHROG	phrog_3193	NA	unknown function
UHGV-0091349_35	UniRef90	UniRef90_A0A173VGZ5	ASCH domain	NA
UHGV-0091349_35	eggNOG-mapper	1347393.HG726021_gene398	ASCH domain	NA
UHGV-0091349_35	Pfam	PF04266	ASCH domain	ASCH
UHGV-0091349_35	Structural annotation	COG4933	NA	NA
UHGV-0091349_37	UniRef90	UniRef90_UPI00189B4653	NA	NA
UHGV-0091349_37	eggNOG-mapper	742727.HMPREF9447_04873	NA	NA
UHGV-0091349_37	Pfam	PF04448	NA	DUF551
UHGV-0091349_38	Structural annotation	PF02257	NA	NA
UHGV-0091349_40	PHROG	phrog_32516	NA	unknown function
UHGV-0091349_40	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0091349_40	Structural annotation	PF11134, COG3292	NA	NA
UHGV-0091349_45	PHROG	phrog_156	portal protein	head and packaging
UHGV-0091349_45	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-0091349_45	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0091349_50	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-0091349_51	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0091349_53	PHROG	phrog_1281	NA	unknown function
UHGV-0091349_53	UniRef90	UniRef90_A0A180F543	Putative phage-associated protein	NA
UHGV-0091349_53	eggNOG-mapper	706436.HMPREF9074_09396	NA	NA
UHGV-0091349_53	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0091349_53	COG	COG3600	NA	NA
UHGV-0091349_53	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0091349_54	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0091349_55	PHROG	phrog_26448	NA	unknown function
UHGV-0091349_55	eggNOG-mapper	411477.PARMER_02011	NA	NA
UHGV-0091349_55	Pfam	PF20647	NA	DUF6808
UHGV-0091349_55	Structural annotation	PF20647	NA	NA
UHGV-0091349_56	PHROG	phrog_32732	NA	unknown function
UHGV-0091349_56	UniRef90	UniRef90_R6YL95	Conserved domain protein	NA
UHGV-0091349_56	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0091349_56	dbAPIS	APIS052	NA	NA
UHGV-0091349_56	Structural annotation	PF10458	NA	NA
UHGV-0091349_57	PHROG	phrog_873	endolysin	head and packaging
UHGV-0091349_57	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-0091349_57	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-0091349_58	PHROG	phrog_15037	NA	unknown function
UHGV-0091349_58	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0091349_58	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0091349_58	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0091349_59	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0091349_59	UniRef90	UniRef90_A0A173VGJ1	SGNH_hydro domain-containing protein	NA
UHGV-0091349_59	eggNOG-mapper	1121333.JMLH01000086_gene1313	calcium- and calmodulin-responsive adenylate cyclase activity	NA
UHGV-0091349_59	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0091349_59	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0091349_59	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0091349_59	Structural annotation	PF16255, NF041897, COG2845	NA	NA
UHGV-0091349_60	PHROG	phrog_697	structural protein	head and packaging
UHGV-0091349_60	UniRef90	UniRef90_A0A173VIN9	Mtd_N domain-containing protein	NA
UHGV-0091349_60	eggNOG-mapper	679935.Alfi_2724	NA	NA
UHGV-0091349_60	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0091349_61	UniRef90	UniRef90_A0A385DVA9	Putative C-type lectin	NA
UHGV-0091349_61	eggNOG-mapper	1151292.QEW_0665	NA	NA
UHGV-0091349_63	PHROG	phrog_20787	virion structural protein	head and packaging
UHGV-0091349_64	PHROG	phrog_22135	NA	unknown function
UHGV-0091349_64	Structural annotation	PF17212	NA	NA
UHGV-0091349_66	PHROG	phrog_26635	NA	unknown function
UHGV-0091349_66	UniRef90	UniRef90_R7DGV7	BIG2 domain-containing protein	NA
UHGV-0091349_66	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-0091349_66	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0091349_67	PHROG	phrog_22323	NA	unknown function
UHGV-0091349_67	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-0091349_69	UniRef90	UniRef90_A0A173VHX4	Rhomboid domain-containing protein	NA
UHGV-0091349_69	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0091349_70	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0091349_70	UniRef90	UniRef90_UPI0013E9F59E	terminase	NA
UHGV-0091349_70	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0091349_70	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0091349_70	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091349_71	KOfam	K09511	DNAJB5; DnaJ homolog subfamily B member 5	NA
UHGV-0091349_71	PHROG	phrog_14336	NA	unknown function
UHGV-0091349_71	UniRef90	UniRef90_A0A6I2NHH7	DnaJ domain-containing protein	NA
UHGV-0091349_71	eggNOG-mapper	1286632.P278_19630	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-0091349_71	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0091349_71	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0091349_71	Structural annotation	PF00226, PF20545, MF_00682, NF010870, COG2214, COG3126	NA	NA
UHGV-0091349_73	PHROG	phrog_14770	NA	unknown function
UHGV-0091349_73	UniRef90	UniRef90_A0A3R6KNJ5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0091349_73	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-0091349_73	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0091349_73	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0091349_73	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0091349_73	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0091349_73	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0091349_75	eggNOG-mapper	1347393.HG726020_gene1836	NA	NA
UHGV-0091349_78	PHROG	phrog_1	integrase	integration and excision
UHGV-0091349_78	UniRef90	UniRef90_A0A4S2EKI9	Transposase	NA
UHGV-0091349_78	eggNOG-mapper	679191.HMPREF9018_0670	Belongs to the 'phage' integrase family	NA
UHGV-0091349_78	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0091349_78	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091349_78	Structural annotation	PF13102, PF17293, NF007246, COG4973	NA	NA