UHGV-0091413

Genome information

Genome length 36,548 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091413
vOTU ID	vOTU-066061
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_189555
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.92
Jumbo phage	No

Genome content
Genome length	36,548 bps
GC content	55.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.49%
Average CDS length	516.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091413_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0091413_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0091413_1	UniRef90	UniRef90_UPI00093CA09A	recombinase family protein	NA
UHGV-0091413_1	eggNOG-mapper	1120746.CCNL01000010_gene1415	recombinase activity	NA
UHGV-0091413_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0091413_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0091413_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0091413_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0091413_2	PHROG	phrog_5783	NA	unknown function
UHGV-0091413_2	UniRef90	UniRef90_A0A564SC74	NYN domain protein	NA
UHGV-0091413_2	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-0091413_2	Pfam	PF01936	NYN domain	NYN
UHGV-0091413_2	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0091413_2	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0091413_3	eggNOG-mapper	1211817.CCAT010000041_gene3728	DNA/RNA non-specific endonuclease	NA
UHGV-0091413_3	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0091413_4	UniRef90	UniRef90_A0A3R6Q1U3	NINE protein	NA
UHGV-0091413_4	eggNOG-mapper	445335.CBN_1388	NA	NA
UHGV-0091413_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0091413_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0091413_5	UniRef90	UniRef90_UPI0006C77997	S24 family peptidase	NA
UHGV-0091413_5	eggNOG-mapper	665956.HMPREF1032_02984	Peptidase S24-like	NA
UHGV-0091413_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0091413_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0091413_5	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0091413_6	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0091413_6	Structural annotation	PF07878, COG3609	NA	NA
UHGV-0091413_9	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0091413_9	UniRef90	UniRef90_UPI000E203165	aspartate ammonia-lyase	NA
UHGV-0091413_9	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0091413_9	Pfam	PF11195	NA	DUF2829
UHGV-0091413_9	Structural annotation	PF11195	NA	NA
UHGV-0091413_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0091413_14	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-0091413_14	eggNOG-mapper	679201.HMPREF9334_00461	Siphovirus Gp157	NA
UHGV-0091413_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0091413_14	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0091413_15	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091413_15	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0091413_15	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0091413_15	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0091413_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0091413_16	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0091413_16	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0091413_16	Structural annotation	PF05772	NA	NA
UHGV-0091413_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0091413_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091413_17	UniRef90	UniRef90_A0A3D0M0E8	Single-stranded DNA-binding protein	NA
UHGV-0091413_17	eggNOG-mapper	1121334.KB911069_gene1617	Single-stranded DNA-binding protein	NA
UHGV-0091413_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0091413_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0091413_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0091413_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0091413_17	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0091413_18	Structural annotation	PF21715, MF_01804, COG1654	NA	NA
UHGV-0091413_19	PHROG	phrog_16304	NA	unknown function
UHGV-0091413_19	UniRef90	UniRef90_A0A417W2I9	NA	NA
UHGV-0091413_19	eggNOG-mapper	1449126.JQKL01000003_gene1705	ROK family	NA
UHGV-0091413_19	Pfam	PF19808	NA	DUF6291
UHGV-0091413_19	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0091413_19	Structural annotation	PF19808	NA	NA
UHGV-0091413_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0091413_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0091413_20	UniRef90	UniRef90_A0A1Y4EVJ1	DNA helicase	NA
UHGV-0091413_20	eggNOG-mapper	1118054.CAGW01000038_gene945	Participates in initiation and elongation during chromosome replication	NA
UHGV-0091413_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0091413_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0091413_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0091413_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0091413_22	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0091413_22	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0091413_22	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0091413_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091413_24	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091413_25	PHROG	phrog_1934	NA	unknown function
UHGV-0091413_25	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-0091413_25	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0091413_25	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0091413_25	Structural annotation	PF11672	NA	NA
UHGV-0091413_28	PHROG	phrog_10714	NA	unknown function
UHGV-0091413_28	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0091413_28	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0091413_28	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0091413_29	PHROG	phrog_25732	NA	unknown function
UHGV-0091413_29	Structural annotation	COG4466	NA	NA
UHGV-0091413_31	UniRef90	UniRef90_A0A1H1GVZ7	NA	NA
UHGV-0091413_32	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0091413_37	UniRef90	UniRef90_A0A3A9EZN6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0091413_37	eggNOG-mapper	1120998.AUFC01000030_gene2225	NA	NA
UHGV-0091413_37	Structural annotation	PF02996	NA	NA
UHGV-0091413_38	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0091413_38	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0091413_38	UniRef90	UniRef90_A0A0S2W5Q3	NA	NA
UHGV-0091413_38	eggNOG-mapper	2754.EH55_13230	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0091413_38	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0091413_38	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0091413_38	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0091413_39	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0091413_39	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0091413_39	UniRef90	UniRef90_A0A1I3T1Z8	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0091413_39	eggNOG-mapper	243275.TDE_1838	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0091413_39	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0091413_39	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0091413_39	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0091413_41	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0091413_41	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091413_41	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0091413_41	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0091413_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0091413_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091413_41	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0091413_42	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0091413_42	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0091413_42	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0091413_42	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0091413_42	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0091413_43	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091413_43	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0091413_43	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0091413_43	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0091413_43	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091413_43	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091413_43	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0091413_44	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091413_44	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0091413_44	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0091413_44	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091413_44	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0091413_44	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091413_44	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0091413_45	KOfam	K06904	NA	NA
UHGV-0091413_45	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0091413_45	UniRef90	UniRef90_A0A1C6H687	Phage prohead protease, HK97 family	NA
UHGV-0091413_45	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0091413_45	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0091413_45	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0091413_45	COG	COG3740	Phage head maturation protease	NA
UHGV-0091413_45	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0091413_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091413_46	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0091413_46	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0091413_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091413_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091413_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091413_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091413_47	PHROG	phrog_2550	NA	unknown function
UHGV-0091413_47	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0091413_47	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0091413_47	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0091413_48	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0091413_48	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0091413_48	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0091413_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091413_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091413_49	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-0091413_49	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0091413_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091413_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0091413_50	PHROG	phrog_78	tail terminator	connector
UHGV-0091413_50	eggNOG-mapper	411471.SUBVAR_05856	NA	NA
UHGV-0091413_50	Structural annotation	PF20765	NA	NA
UHGV-0091413_51	PHROG	phrog_88	major tail protein	tail
UHGV-0091413_51	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-0091413_51	eggNOG-mapper	411471.SUBVAR_05857	phage major tail protein, phi13 family	NA
UHGV-0091413_51	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091413_51	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0091413_52	PHROG	phrog_709	NA	unknown function
UHGV-0091413_52	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0091413_53	PHROG	phrog_3033	NA	unknown function
UHGV-0091413_53	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0091413_53	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-0091413_54	PHROG	phrog_23464	NA	unknown function
UHGV-0091413_54	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0091413_54	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0091413_54	COG	COG5412	Phage-related protein	NA
UHGV-0091413_54	Structural annotation	PF06120	NA	NA
UHGV-0091413_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091413_55	UniRef90	UniRef90_A0A2T5ILX0	Phage-related protein	NA
UHGV-0091413_55	eggNOG-mapper	585506.HMPREF0877_0163	tail component	NA
UHGV-0091413_55	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091413_55	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091413_56	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091413_56	UniRef90	UniRef90_UPI000C79A3A8	phage tail protein	NA
UHGV-0091413_56	COG	COG4926	Phage-related protein	NA
UHGV-0091413_56	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091413_57	KOfam	K07218	nosD; nitrous oxidase accessory protein	NA
UHGV-0091413_57	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0091413_57	eggNOG-mapper	1120998.AUFC01000016_gene5	alginic acid biosynthetic process	NA
UHGV-0091413_57	COG	COG1511	NA	NA
UHGV-0091413_57	Structural annotation	PF12571, PF21548, MF_01348, NF010237, COG5301, COG4447	NA	NA
UHGV-0091413_58	UniRef90	UniRef90_UPI001C1090AB	collagen-like protein	NA
UHGV-0091413_58	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-0091413_58	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0091413_59	PHROG	phrog_13589	NA	unknown function
UHGV-0091413_59	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0091413_59	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0091413_61	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0091413_61	UniRef90	UniRef90_K1UI43	NA	NA
UHGV-0091413_61	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0091413_61	Pfam	PF19789	NA	DUF6273
UHGV-0091413_61	Structural annotation	PF19789	NA	NA
UHGV-0091413_64	PHROG	phrog_1863	NA	unknown function
UHGV-0091413_64	eggNOG-mapper	552398.HMPREF0866_01158	NA	NA
UHGV-0091413_65	PHROG	phrog_10091	holin	lysis
UHGV-0091413_65	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0091413_65	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0091413_65	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0091413_65	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0091413_65	COG	COG5546	NA	NA
UHGV-0091413_65	Structural annotation	COG5546	NA	NA
UHGV-0091413_66	KOfam	K07273	acm; lysozyme	NA
UHGV-0091413_66	PHROG	phrog_291	endolysin	lysis
UHGV-0091413_66	UniRef90	UniRef90_R6YEH7	SLH domain-containing protein	NA
UHGV-0091413_66	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0091413_66	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0091413_66	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0091413_66	Structural annotation	PF01183, COG3757	NA	NA