UHGV-0091596

Genome information

Genome length 41,300 bps

CDS count 63

Completeness 83.77% (medium-quality)

geNomad score 0.9682

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091596
vOTU ID	vOTU-016294
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_171227
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9682
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.42
Jumbo phage	No

Genome content
Genome length	41,300 bps
GC content	59.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.73%
Average CDS length	590.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091596_1	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-0091596_2	PHROG	phrog_6616	tail protein	tail
UHGV-0091596_2	UniRef90	UniRef90_UPI00085BC306	tail fiber domain-containing protein	NA
UHGV-0091596_2	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0091596_2	COG	COG4926	Phage-related protein	NA
UHGV-0091596_2	Structural annotation	PF05113, NF033848, COG4379	NA	NA
UHGV-0091596_3	PHROG	phrog_1194	NA	unknown function
UHGV-0091596_3	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0091596_3	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0091596_3	Pfam	PF20458	NA	DUF6711
UHGV-0091596_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0091596_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0091596_4	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0091596_4	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0091596_6	UniRef90	UniRef90_UPI001106B496	NA	NA
UHGV-0091596_6	Pfam	PF16478	NA	DUF5055
UHGV-0091596_6	Structural annotation	PF16478	NA	NA
UHGV-0091596_7	UniRef90	UniRef90_UPI001106E87B	phage tail protein	NA
UHGV-0091596_7	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0091596_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0091596_9	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0091596_11	UniRef90	UniRef90_UPI001107333C	DNA-packaging protein	NA
UHGV-0091596_11	Structural annotation	TIGR01560	NA	NA
UHGV-0091596_12	PHROG	phrog_247	major head protein	head and packaging
UHGV-0091596_12	UniRef90	UniRef90_UPI001106BB9B	major capsid protein	NA
UHGV-0091596_12	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0091596_12	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0091596_12	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0091596_13	UniRef90	UniRef90_UPI001C9809E0	NA	NA
UHGV-0091596_13	Structural annotation	PF14265	NA	NA
UHGV-0091596_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0091596_14	UniRef90	UniRef90_UPI0011063BFA	phage portal protein	NA
UHGV-0091596_14	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0091596_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0091596_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0091596_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0091596_15	UniRef90	UniRef90_UPI001106681D	phage terminase large subunit	NA
UHGV-0091596_15	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0091596_15	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0091596_15	COG	COG5410	NA	NA
UHGV-0091596_15	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0091596_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091596_17	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0091596_17	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0091596_17	UniRef90	UniRef90_UPI001BB21D57	recombinase family protein	NA
UHGV-0091596_17	eggNOG-mapper	1280706.AUJE01000062_gene1532	Resolvase, N terminal domain	NA
UHGV-0091596_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0091596_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0091596_17	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0091596_19	UniRef90	UniRef90_UPI001105F6E2	helix-turn-helix domain-containing protein	NA
UHGV-0091596_20	PHROG	phrog_16683	NA	unknown function
UHGV-0091596_20	UniRef90	UniRef90_UPI0015544479	amidoligase family protein	NA
UHGV-0091596_20	eggNOG-mapper	1304866.K413DRAFT_4659	Putative amidoligase enzyme	NA
UHGV-0091596_20	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0091596_21	UniRef90	UniRef90_UPI001E41BE2F	class II glutamine amidotransferase	NA
UHGV-0091596_21	eggNOG-mapper	1401067.HMPREF0872_03875	NA	NA
UHGV-0091596_22	Structural annotation	PF16677	NA	NA
UHGV-0091596_27	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0091596_27	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0091596_27	UniRef90	UniRef90_UPI001BB1FE8B	DNA cytosine methyltransferase	NA
UHGV-0091596_27	eggNOG-mapper	742722.HMPREF9463_00216	C-5 cytosine-specific DNA methylase	NA
UHGV-0091596_27	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0091596_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0091596_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0091596_28	eggNOG-mapper	1384484.AEQU_0051	C-5 cytosine-specific DNA methylase	NA
UHGV-0091596_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0091596_29	UniRef90	UniRef90_UPI0011065E54	helix-turn-helix domain-containing protein	NA
UHGV-0091596_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091596_29	Structural annotation	PF01381, NF010465, COG3655	NA	NA
UHGV-0091596_32	PHROG	phrog_21525	NA	unknown function
UHGV-0091596_33	Structural annotation	PF01649, MF_00500, TIGR00029, COG0268	NA	NA
UHGV-0091596_35	UniRef90	UniRef90_UPI001105C552	helix-turn-helix domain-containing protein	NA
UHGV-0091596_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091596_36	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0091596_36	UniRef90	UniRef90_UPI0011065028	Lar family restriction alleviation protein	NA
UHGV-0091596_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0091596_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0091596_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0091596_36	Structural annotation	NF007260	NA	NA
UHGV-0091596_42	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0091596_42	UniRef90	UniRef90_UPI001BB2BAFF	NA	NA
UHGV-0091596_42	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0091596_42	Pfam	PF14359	NA	DUF4406
UHGV-0091596_43	Structural annotation	PF06530	NA	NA
UHGV-0091596_45	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0091596_45	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0091596_45	UniRef90	UniRef90_UPI00110588D4	ATP-binding protein	NA
UHGV-0091596_45	eggNOG-mapper	1232453.BAIF02000006_gene1450	Bacterial dnaA protein	NA
UHGV-0091596_45	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0091596_45	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0091596_45	Structural annotation	PF01695, PF06827, MF_00377, NF005992, COG1484	NA	NA
UHGV-0091596_46	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0091596_46	UniRef90	UniRef90_UPI001105FF6B	replisome organizer	NA
UHGV-0091596_46	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0091596_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0091596_46	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0091596_47	UniRef90	UniRef90_UPI001BB234D3	NA	NA
UHGV-0091596_47	Pfam	PF11753	NA	DUF3310
UHGV-0091596_48	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0091596_48	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0091596_48	UniRef90	UniRef90_UPI001E3E2DB2	dUTP diphosphatase	NA
UHGV-0091596_48	eggNOG-mapper	397291.C804_00898	dUTPase	NA
UHGV-0091596_48	Pfam	PF00692	dUTPase	dUTPase
UHGV-0091596_48	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0091596_48	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0091596_48	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0091596_51	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0091596_51	UniRef90	UniRef90_UPI0011069D09	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0091596_51	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0091596_51	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0091596_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0091596_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091596_52	UniRef90	UniRef90_UPI0011074123	single-stranded DNA-binding protein	NA
UHGV-0091596_52	eggNOG-mapper	445975.COLSTE_02276	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0091596_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0091596_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0091596_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0091596_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0091596_52	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0091596_53	UniRef90	UniRef90_UPI0011067053	integration host factor	NA
UHGV-0091596_53	eggNOG-mapper	1504822.CCNO01000015_gene823	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	NA
UHGV-0091596_53	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-0091596_53	COG	COG0099	Ribosomal protein S13	NA
UHGV-0091596_53	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-0091596_54	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0091596_54	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091596_54	UniRef90	UniRef90_UPI0014858083	recombinase RecT	NA
UHGV-0091596_54	eggNOG-mapper	1504822.CCNO01000015_gene598	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0091596_54	Pfam	PF03837	RecT family	RecT
UHGV-0091596_54	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0091596_54	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0091596_54	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0091596_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091596_55	UniRef90	UniRef90_UPI00110603B3	YqaJ viral recombinase family protein	NA
UHGV-0091596_55	eggNOG-mapper	1504822.CCNO01000015_gene597	YqaJ viral recombinase family	NA
UHGV-0091596_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0091596_55	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0091596_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0091596_55	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0091596_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0091596_57	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0091596_57	UniRef90	UniRef90_UPI0011061354	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0091596_57	eggNOG-mapper	521003.COLINT_02312	Endodeoxyribonuclease RusA	NA
UHGV-0091596_57	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0091596_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0091596_57	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0091596_58	UniRef90	UniRef90_UPI00101ADA0E	helix-turn-helix domain-containing protein	NA
UHGV-0091596_58	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0091596_59	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0091596_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091596_59	UniRef90	UniRef90_UPI001106A548	helix-turn-helix domain-containing protein	NA
UHGV-0091596_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091596_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091596_59	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0091596_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0091596_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091596_60	UniRef90	UniRef90_UPI00110609FE	helix-turn-helix domain-containing protein	NA
UHGV-0091596_60	eggNOG-mapper	502558.EGYY_06070	PFAM helix-turn-helix domain protein	NA
UHGV-0091596_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091596_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091596_60	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0091596_61	KOfam	K14059	int; integrase	NA
UHGV-0091596_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0091596_61	UniRef90	UniRef90_UPI001106575D	tyrosine-type recombinase/integrase	NA
UHGV-0091596_61	eggNOG-mapper	1125712.HMPREF1316_1553	DNA integration	NA
UHGV-0091596_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0091596_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091596_62	eggNOG-mapper	1504822.CCNO01000015_gene585	Belongs to the 'phage' integrase family	NA
UHGV-0091596_62	COG	COG4974	Site-specific recombinase XerD	NA