UHGV-0091630

Genome information

Genome length 35,950 bps

CDS count 47

Completeness 90.72% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091630
vOTU ID	vOTU-014290
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_181251
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.99
Jumbo phage	No

Genome content
Genome length	35,950 bps
GC content	54.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	94.73%
Average CDS length	727.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091630_1	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0091630_1	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0091630_1	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0091630_1	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0091630_1	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0091630_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0091630_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0091630_1	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0091630_3	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0091630_3	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0091630_3	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0091630_4	PHROG	phrog_1029	NA	unknown function
UHGV-0091630_4	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0091630_4	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0091630_5	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0091630_5	PHROG	phrog_1499	NA	unknown function
UHGV-0091630_5	UniRef90	UniRef90_A0A1Q6JHZ0	AAA_23 domain-containing protein	NA
UHGV-0091630_5	eggNOG-mapper	1007096.BAGW01000023_gene155	DNA recombination	NA
UHGV-0091630_5	Pfam	PF13476	AAA domain	AAA_23
UHGV-0091630_5	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0091630_5	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0091630_6	PHROG	phrog_21613	NA	unknown function
UHGV-0091630_6	eggNOG-mapper	1007096.BAGW01000023_gene153	NA	NA
UHGV-0091630_7	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091630_7	UniRef90	UniRef90_UPI00164E5A62	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0091630_7	eggNOG-mapper	1007096.BAGW01000023_gene152	NA	NA
UHGV-0091630_7	Pfam	PF12684	NA	DUF3799
UHGV-0091630_7	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0091630_7	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0091630_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0091630_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091630_8	UniRef90	UniRef90_A0A2U1BEJ1	Single-stranded DNA-binding protein	NA
UHGV-0091630_8	eggNOG-mapper	718252.FP2_05080	Single-stranded DNA-binding protein	NA
UHGV-0091630_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0091630_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0091630_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0091630_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0091630_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0091630_9	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0091630_9	PHROG	phrog_11992	NA	unknown function
UHGV-0091630_9	UniRef90	UniRef90_A0A1Q6JHS4	ZnF_CHCC domain-containing protein	NA
UHGV-0091630_9	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0091630_9	PADLOC	drt-cluster192	DRT	DRT
UHGV-0091630_9	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0091630_9	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0091630_9	Structural annotation	PF01807	NA	NA
UHGV-0091630_10	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0091630_10	UniRef90	UniRef90_UPI0002DD5FF2	NA	NA
UHGV-0091630_10	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0091630_10	Pfam	PF06048	NA	DUF927
UHGV-0091630_10	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0091630_10	COG	COG5519	NA	NA
UHGV-0091630_10	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0091630_11	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0091630_11	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0091630_11	UniRef90	UniRef90_A0A2U1BEG6	Superfamily II DNA or RNA helicase	NA
UHGV-0091630_11	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0091630_11	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0091630_11	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0091630_11	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0091630_11	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0091630_11	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0091630_12	PHROG	phrog_824	NA	unknown function
UHGV-0091630_12	UniRef90	UniRef90_A0A1Q6JHZ3	VRR-NUC domain-containing protein	NA
UHGV-0091630_12	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0091630_12	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0091630_12	Structural annotation	PF08774	NA	NA
UHGV-0091630_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0091630_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0091630_14	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0091630_14	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0091630_14	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0091630_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0091630_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0091630_14	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0091630_15	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0091630_15	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0091630_15	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0091630_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091630_20	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-0091630_20	eggNOG-mapper	1280706.AUJE01000003_gene2196	sigma factor activity	NA
UHGV-0091630_20	Pfam	PF07374	NA	DUF1492
UHGV-0091630_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0091630_20	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0091630_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0091630_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0091630_21	UniRef90	UniRef90_A0A6N7XHE4	Terminase small subunit	NA
UHGV-0091630_21	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0091630_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0091630_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0091630_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0091630_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091630_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0091630_22	UniRef90	UniRef90_A0A1C5PQJ7	Phage terminase, large subunit, PBSX family	NA
UHGV-0091630_22	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0091630_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0091630_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0091630_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0091630_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091630_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0091630_23	PHROG	phrog_37604	NA	unknown function
UHGV-0091630_23	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0091630_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0091630_27	UniRef90	UniRef90_UPI001C0F698D	phage portal protein	NA
UHGV-0091630_27	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0091630_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0091630_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0091630_28	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0091630_28	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-0091630_28	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0091630_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0091630_28	Pfam	PF21814	NA	DUF6883
UHGV-0091630_28	COG	COG2369	NA	NA
UHGV-0091630_28	Structural annotation	PF21814, PF06152, TIGR01641, COG2369	NA	NA
UHGV-0091630_29	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-0091630_29	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0091630_30	PHROG	phrog_881	holin	lysis
UHGV-0091630_30	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0091630_30	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0091630_30	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0091630_30	Structural annotation	PF16938	NA	NA
UHGV-0091630_31	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091630_31	PHROG	phrog_1493	endolysin	lysis
UHGV-0091630_31	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0091630_31	eggNOG-mapper	1504823.CCMM01000013_gene2367	Ami_2	NA
UHGV-0091630_31	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091630_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0091630_31	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0091630_31	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0091630_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0091630_32	UniRef90	UniRef90_UPI001C0FB34A	phage scaffolding protein	NA
UHGV-0091630_32	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0091630_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0091630_32	Structural annotation	PF06810	NA	NA
UHGV-0091630_33	PHROG	phrog_212	major head protein	head and packaging
UHGV-0091630_33	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-0091630_33	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0091630_33	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0091630_35	PHROG	phrog_1236	head protein	head and packaging
UHGV-0091630_35	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0091630_35	Structural annotation	PF05135	NA	NA
UHGV-0091630_36	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0091630_36	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-0091630_36	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0091630_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0091630_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091630_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091630_37	UniRef90	UniRef90_UPI000E5D9FC1	HK97 gp10 family phage protein	NA
UHGV-0091630_37	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0091630_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091630_37	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0091630_38	PHROG	phrog_957	head protein	head and packaging
UHGV-0091630_38	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0091630_38	Structural annotation	PF12691	NA	NA
UHGV-0091630_39	PHROG	phrog_885	major tail protein	tail
UHGV-0091630_39	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0091630_39	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0091630_40	PHROG	phrog_1021	NA	unknown function
UHGV-0091630_40	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0091630_42	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0091630_42	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0091630_42	eggNOG-mapper	1203602.HMPREF1527_01082	Phage tail tape measure protein TP901	NA
UHGV-0091630_42	COG	COG5412	Phage-related protein	NA
UHGV-0091630_42	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0091630_43	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0091630_44	PHROG	phrog_5555	tail protein	tail
UHGV-0091630_44	UniRef90	UniRef90_UPI00085C46C7	phage tail protein	NA
UHGV-0091630_44	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0091630_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091630_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091630_44	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0091630_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091630_45	PHROG	phrog_16573	NA	unknown function
UHGV-0091630_45	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0091630_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0091630_45	Structural annotation	PF10651, TIGR02059	NA	NA
UHGV-0091630_46	UniRef90	UniRef90_F7JKT1	C2H2-type domain-containing protein	NA
UHGV-0091630_47	eggNOG-mapper	1519439.JPJG01000014_gene134	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091630_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA