UHGV-0091637

Genome information

Genome length 28,051 bps

CDS count 49

Completeness 84.84% (medium-quality)

geNomad score 0.9526

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091637
vOTU ID	vOTU-017221
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_197927
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9526
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.89
Jumbo phage	No

Genome content
Genome length	28,051 bps
GC content	27.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.97%
Average CDS length	524.88 bps
tRNA count	7
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091637_1	PHROG	phrog_7566	NA	unknown function
UHGV-0091637_1	UniRef90	UniRef90_A0A417V5I7	Phosphoenolpyruvate carboxykinase	NA
UHGV-0091637_1	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0091637_2	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0091637_2	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0091637_2	UniRef90	UniRef90_A0A847CWY3	M23 family metallopeptidase	NA
UHGV-0091637_2	eggNOG-mapper	1120998.AUFC01000030_gene2250	heme binding	NA
UHGV-0091637_2	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0091637_2	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0091637_2	Structural annotation	PF01551, PF08460, NF040883, COG0739, COG3103	NA	NA
UHGV-0091637_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0091637_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0091637_9	PHROG	phrog_5555	tail protein	tail
UHGV-0091637_9	UniRef90	UniRef90_A0A1W6AES0	Endopeptidase	NA
UHGV-0091637_9	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0091637_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091637_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091637_9	COG	COG4926	Phage-related protein	NA
UHGV-0091637_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091637_10	UniRef90	UniRef90_A0A845QU54	Phage tail protein	NA
UHGV-0091637_10	eggNOG-mapper	1415774.U728_1243	NA	NA
UHGV-0091637_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091637_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091637_11	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0091637_11	UniRef90	UniRef90_R6GII4	Immunity-specific protein Beta241	NA
UHGV-0091637_11	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-0091637_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0091637_11	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0091637_13	PHROG	phrog_885	major tail protein	tail
UHGV-0091637_13	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-0091637_13	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-0091637_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0091637_14	PHROG	phrog_957	head protein	head and packaging
UHGV-0091637_14	Structural annotation	PF11367	NA	NA
UHGV-0091637_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091637_15	Structural annotation	TIGR01725	NA	NA
UHGV-0091637_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0091637_16	UniRef90	UniRef90_UPI000F066148	phage head closure protein	NA
UHGV-0091637_16	eggNOG-mapper	1160721.RBI_I01580	head-tail adaptor	NA
UHGV-0091637_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0091637_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091637_17	PHROG	phrog_5223	neck protein	connector
UHGV-0091637_17	UniRef90	UniRef90_UPI000C06DEDD	head-tail connector protein	NA
UHGV-0091637_17	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0091637_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0091637_17	Structural annotation	TIGR01560	NA	NA
UHGV-0091637_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091637_18	UniRef90	UniRef90_A0A1T4M146	Phage major capsid protein, HK97 family	NA
UHGV-0091637_18	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-0091637_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091637_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091637_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091637_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091637_19	KOfam	K06904	NA	NA
UHGV-0091637_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0091637_19	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0091637_19	eggNOG-mapper	642492.Clole_1857	Phage prohead protease, HK97 family	NA
UHGV-0091637_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0091637_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0091637_19	COG	COG3740	Phage head maturation protease	NA
UHGV-0091637_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0091637_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091637_21	UniRef90	UniRef90_A0A7X7AAU2	Phage portal protein	NA
UHGV-0091637_21	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-0091637_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091637_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091637_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091637_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091637_22	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0091637_22	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0091637_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0091637_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091637_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091637_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0091637_23	PHROG	phrog_1066	NA	unknown function
UHGV-0091637_23	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0091637_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0091637_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091637_25	UniRef90	UniRef90_UPI000F06AC0F	HNH endonuclease	NA
UHGV-0091637_25	eggNOG-mapper	927704.SELR_11230	HNH endonuclease	NA
UHGV-0091637_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0091637_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091637_26	Structural annotation	PF15456	NA	NA
UHGV-0091637_27	eggNOG-mapper	1443122.Z958_05750	PFAM HD domain	NA
UHGV-0091637_27	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0091637_28	PHROG	phrog_25754	NA	unknown function
UHGV-0091637_28	Structural annotation	PF06372, MF_01077, NF011232, COG1958	NA	NA
UHGV-0091637_37	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091637_37	UniRef90	UniRef90_A0A354MDA7	HNH endonuclease	NA
UHGV-0091637_37	eggNOG-mapper	696281.Desru_1079	HNH endonuclease	NA
UHGV-0091637_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0091637_37	Structural annotation	PF13392	NA	NA
UHGV-0091637_38	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0091637_38	eggNOG-mapper	796940.HMPREF9628_00162	NA	NA
UHGV-0091637_38	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0091637_39	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0091637_39	PHROG	phrog_216	integrase	integration and excision
UHGV-0091637_39	UniRef90	UniRef90_R7ID34	Tyr recombinase domain-containing protein	NA
UHGV-0091637_39	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0091637_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091637_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091637_39	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0091637_40	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0091637_41	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0091637_41	UniRef90	UniRef90_K2PHK9	Phage replication protein	NA
UHGV-0091637_41	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0091637_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0091637_41	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0091637_45	UniRef90	UniRef90_R5A161	Helix-turn-helix domain protein	NA
UHGV-0091637_45	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0091637_46	UniRef90	UniRef90_R5A425	DNA-binding helix-turn-helix protein	NA
UHGV-0091637_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0091637_47	UniRef90	UniRef90_R5AAT8	Peptidase_M78 domain-containing protein	NA
UHGV-0091637_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0091637_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0091637_48	eggNOG-mapper	445971.ANASTE_00286	NA	NA
UHGV-0091637_49	KOfam	K14059	int; integrase	NA
UHGV-0091637_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0091637_49	UniRef90	UniRef90_R5A639	Tyr recombinase domain-containing protein	NA
UHGV-0091637_49	eggNOG-mapper	1123405.AUMM01000039_gene173	Phage integrase family	NA
UHGV-0091637_49	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0091637_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091637_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091637_49	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA