UHGV-0091643

Genome information

Genome length 32,025 bps

CDS count 57

Completeness 79.12% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091643
vOTU ID	vOTU-024077
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_197921
BioSample	SAMEA3449312
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.09
Jumbo phage	No

Genome content
Genome length	32,025 bps
GC content	40.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.93%
Average CDS length	521.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091643_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0091643_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0091643_1	UniRef90	UniRef90_UPI0011853F05	recombinase family protein	NA
UHGV-0091643_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0091643_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0091643_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0091643_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0091643_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0091643_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0091643_2	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0091643_2	PHROG	phrog_6050	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091643_2	UniRef90	UniRef90_A0A855H9N1	HNHc domain-containing protein	NA
UHGV-0091643_2	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0091643_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0091643_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091643_2	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0091643_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0091643_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091643_3	UniRef90	UniRef90_UPI000463EE2B	type I restriction endonuclease	NA
UHGV-0091643_3	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0091643_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0091643_3	COG	COG4748	NA	NA
UHGV-0091643_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0091643_4	PHROG	phrog_87	metallo-protease	other
UHGV-0091643_4	UniRef90	UniRef90_A0A829NVG0	Peptidase_M78 domain-containing protein	NA
UHGV-0091643_4	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0091643_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0091643_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0091643_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0091643_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0091643_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091643_5	UniRef90	UniRef90_A0A2N5Q2U4	Transcriptional regulator	NA
UHGV-0091643_5	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0091643_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091643_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0091643_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0091643_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091643_6	UniRef90	UniRef90_UPI0011857E45	helix-turn-helix domain-containing protein	NA
UHGV-0091643_6	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0091643_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091643_6	Structural annotation	PF01381, TIGR02607, COG1396	NA	NA
UHGV-0091643_11	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0091643_11	UniRef90	UniRef90_UPI0004656795	Bro-N domain-containing protein	NA
UHGV-0091643_11	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0091643_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0091643_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0091643_11	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0091643_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091643_15	UniRef90	UniRef90_A0A2N5PKD7	Recombinase	NA
UHGV-0091643_15	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0091643_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0091643_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0091643_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0091643_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0091643_16	PHROG	phrog_674	NA	unknown function
UHGV-0091643_16	UniRef90	UniRef90_UPI000462FA44	NA	NA
UHGV-0091643_16	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0091643_16	Pfam	PF07083	NA	DUF1351
UHGV-0091643_16	Structural annotation	PF07083	NA	NA
UHGV-0091643_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0091643_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091643_17	UniRef90	UniRef90_A0A2N5PKF9	Recombinase	NA
UHGV-0091643_17	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0091643_17	Pfam	PF03837	RecT family	RecT
UHGV-0091643_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0091643_17	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0091643_17	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0091643_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0091643_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091643_18	UniRef90	UniRef90_A0A2N5PKE3	Single-stranded DNA-binding protein	NA
UHGV-0091643_18	eggNOG-mapper	626523.GCWU000342_01558	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0091643_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0091643_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0091643_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0091643_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0091643_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0091643_19	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0091643_19	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-0091643_19	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0091643_20	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0091643_20	UniRef90	UniRef90_A0A2N5PKG2	Phage_rep_org_N domain-containing protein	NA
UHGV-0091643_20	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0091643_20	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0091643_20	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0091643_20	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0091643_21	PHROG	phrog_2600	NA	unknown function
UHGV-0091643_21	eggNOG-mapper	1178540.BA70_18565	NA	NA
UHGV-0091643_22	PHROG	phrog_25488	NA	unknown function
UHGV-0091643_22	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0091643_24	PHROG	phrog_17690	NA	unknown function
UHGV-0091643_24	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0091643_24	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0091643_29	UniRef90	UniRef90_UPI001D04EA1D	NA	NA
UHGV-0091643_29	Pfam	PF04448	NA	DUF551
UHGV-0091643_29	Structural annotation	PF04448	NA	NA
UHGV-0091643_30	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091643_30	eggNOG-mapper	86416.Clopa_4295	NA	NA
UHGV-0091643_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0091643_31	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0091643_33	Structural annotation	PF02895	NA	NA
UHGV-0091643_34	PHROG	phrog_15198	NA	unknown function
UHGV-0091643_34	UniRef90	UniRef90_A0A8B3BTL4	NA	NA
UHGV-0091643_34	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0091643_36	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0091643_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091643_39	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0091643_39	eggNOG-mapper	1235792.C808_05360	NA	NA
UHGV-0091643_39	Structural annotation	PF02996	NA	NA
UHGV-0091643_41	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0091643_41	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0091643_41	UniRef90	UniRef90_A0A2N5PB18	Terminase small subunit	NA
UHGV-0091643_41	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0091643_41	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0091643_41	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0091643_41	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0091643_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091643_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0091643_42	UniRef90	UniRef90_A0A2N5P5F6	Terminase	NA
UHGV-0091643_42	eggNOG-mapper	1430331.EP10_10340	Phage terminase, large subunit	NA
UHGV-0091643_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0091643_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0091643_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0091643_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091643_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0091643_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0091643_43	UniRef90	UniRef90_A0A2N5PAZ2	Phage portal protein	NA
UHGV-0091643_43	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0091643_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0091643_43	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0091643_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0091643_44	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0091643_44	UniRef90	UniRef90_A0A2N5P5J9	Phage_Mu_F domain-containing protein	NA
UHGV-0091643_44	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0091643_44	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0091643_44	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0091643_44	COG	COG2369	NA	NA
UHGV-0091643_44	Structural annotation	PF04233, PF15529, TIGR01641, COG2369	NA	NA
UHGV-0091643_45	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0091643_45	Structural annotation	PF10827	NA	NA
UHGV-0091643_46	KOfam	K07584	NA	NA
UHGV-0091643_46	PHROG	phrog_4478	peptidase	other
UHGV-0091643_46	UniRef90	UniRef90_A0A415S8E3	Ribosomal-processing cysteine protease Prp	NA
UHGV-0091643_46	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0091643_46	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0091643_46	COG	COG2868	NA	NA
UHGV-0091643_46	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0091643_47	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0091643_47	UniRef90	UniRef90_A0A3A5TW83	NA	NA
UHGV-0091643_47	eggNOG-mapper	272558.10176153	NA	NA
UHGV-0091643_47	Pfam	PF14265	NA	DUF4355
UHGV-0091643_47	Structural annotation	PF14265	NA	NA
UHGV-0091643_48	PHROG	phrog_840	major head protein	head and packaging
UHGV-0091643_48	UniRef90	UniRef90_A0A2N5P5Q7	Phage capsid protein	NA
UHGV-0091643_48	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0091643_48	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0091643_49	KOfam	K24218	C1QTNF7; complement C1q and tumor necrosis factor-related protein 7	NA
UHGV-0091643_49	PHROG	phrog_366	tail fiber protein	tail
UHGV-0091643_49	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0091643_49	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0091643_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0091643_49	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0091643_49	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0091643_50	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0091643_50	UniRef90	UniRef90_UPI001D03FC16	phage head-tail connector protein	NA
UHGV-0091643_50	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0091643_50	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0091643_50	Structural annotation	PF05135	NA	NA
UHGV-0091643_51	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0091643_51	eggNOG-mapper	1235798.C817_03474	NA	NA
UHGV-0091643_51	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0091643_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091643_52	UniRef90	UniRef90_UPI00195DCB77	HK97 gp10 family phage protein	NA
UHGV-0091643_52	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0091643_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091643_52	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0091643_52	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0091643_53	PHROG	phrog_176	tail terminator	connector
UHGV-0091643_53	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0091643_53	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0091643_53	Structural annotation	PF11367	NA	NA
UHGV-0091643_54	PHROG	phrog_238	major tail protein	tail
UHGV-0091643_54	UniRef90	UniRef90_A0A3A5TWF7	Phage major tail protein, TP901-1 family	NA
UHGV-0091643_54	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0091643_54	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0091643_54	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0091643_54	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0091643_55	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0091643_55	UniRef90	UniRef90_A0A1M6RGW0	Phage tail assembly chaperone protein, TAC	NA
UHGV-0091643_55	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0091643_55	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0091643_55	Structural annotation	PF12363	NA	NA
UHGV-0091643_56	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0091643_56	eggNOG-mapper	476272.RUMHYD_02862	NA	NA
UHGV-0091643_57	PHROG	phrog_1204	tail protein	tail
UHGV-0091643_57	UniRef90	UniRef90_UPI0006C09509	tape measure protein	NA
UHGV-0091643_57	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-0091643_57	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0091643_57	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0091643_57	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0091643_57	Structural annotation	PF20155, COG3941	NA	NA