UHGV-0091696

Genome information

Genome length 37,234 bps

CDS count 42

Completeness 58.76% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091696
vOTU ID	vOTU-024001
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187612
BioSample	SAMEA3449274
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.89
Jumbo phage	No

Genome content
Genome length	37,234 bps
GC content	45.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.38%
Average CDS length	830.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091696_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091696_1	PHROG	phrog_670	endolysin	lysis
UHGV-0091696_1	UniRef90	UniRef90_A0A1V5S1N9	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0091696_1	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0091696_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091696_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091696_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0091696_2	PHROG	phrog_13256	NA	unknown function
UHGV-0091696_2	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0091696_4	PHROG	phrog_4105	NA	unknown function
UHGV-0091696_5	UniRef90	UniRef90_UPI0006836C21	leucine-rich repeat protein	NA
UHGV-0091696_5	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0091696_6	PHROG	phrog_13589	NA	unknown function
UHGV-0091696_6	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0091696_7	PHROG	phrog_31538	NA	unknown function
UHGV-0091696_7	eggNOG-mapper	411460.RUMTOR_01351	NA	NA
UHGV-0091696_8	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0091696_9	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0091696_9	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0091696_9	Pfam	PF19789	NA	DUF6273
UHGV-0091696_9	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0091696_9	Structural annotation	PF19789	NA	NA
UHGV-0091696_10	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0091696_10	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0091696_10	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0091696_11	Structural annotation	PF21683	NA	NA
UHGV-0091696_12	COG	COG3209	NA	NA
UHGV-0091696_12	Structural annotation	NF033189	NA	NA
UHGV-0091696_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091696_13	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-0091696_13	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0091696_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091696_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091696_13	COG	COG4926	Phage-related protein	NA
UHGV-0091696_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091696_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091696_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0091696_14	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0091696_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091696_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091696_15	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0091696_15	UniRef90	UniRef90_UPI0018AC889D	tape measure protein	NA
UHGV-0091696_15	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-0091696_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0091696_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0091696_15	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0091696_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0091696_16	UniRef90	UniRef90_A0A3A9JBQ1	HK97 gp10 family phage protein	NA
UHGV-0091696_16	eggNOG-mapper	665956.HMPREF1032_00685	NA	NA
UHGV-0091696_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091696_16	Structural annotation	TIGR01725	NA	NA
UHGV-0091696_17	PHROG	phrog_4338	NA	unknown function
UHGV-0091696_17	eggNOG-mapper	411460.RUMTOR_01339	NA	NA
UHGV-0091696_18	PHROG	phrog_4282	NA	unknown function
UHGV-0091696_18	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0091696_19	PHROG	phrog_2645	major tail protein	tail
UHGV-0091696_19	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0091696_19	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0091696_19	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0091696_20	eggNOG-mapper	428125.CLOLEP_01414	NA	NA
UHGV-0091696_20	Structural annotation	PF20765	NA	NA
UHGV-0091696_21	PHROG	phrog_4270	NA	unknown function
UHGV-0091696_21	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-0091696_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0091696_22	KOfam	K06904	NA	NA
UHGV-0091696_22	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0091696_22	UniRef90	UniRef90_A7VS74	Caudovirus prohead protease	NA
UHGV-0091696_22	eggNOG-mapper	428125.CLOLEP_01412	Caudovirus prohead serine protease	NA
UHGV-0091696_22	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0091696_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091696_23	UniRef90	UniRef90_A0A7X5EBN7	Phage portal protein	NA
UHGV-0091696_23	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-0091696_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091696_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091696_24	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0091696_25	PHROG	phrog_32444	NA	unknown function
UHGV-0091696_25	eggNOG-mapper	665956.HMPREF1032_00673	NA	NA
UHGV-0091696_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091696_26	UniRef90	UniRef90_UPI001D05F004	terminase large subunit	NA
UHGV-0091696_26	eggNOG-mapper	665956.HMPREF1032_00672	Phage Terminase	NA
UHGV-0091696_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091696_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091696_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091696_27	PHROG	phrog_32444	NA	unknown function
UHGV-0091696_27	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0091696_28	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0091696_28	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0091696_28	eggNOG-mapper	428125.CLOLEP_01407	NA	NA
UHGV-0091696_29	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091696_29	eggNOG-mapper	428125.CLOLEP_01405	NA	NA
UHGV-0091696_30	PHROG	phrog_4259	NA	unknown function
UHGV-0091696_30	eggNOG-mapper	411460.RUMTOR_01353	NA	NA
UHGV-0091696_31	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0091696_32	PHROG	phrog_4303	NA	unknown function
UHGV-0091696_32	eggNOG-mapper	665956.HMPREF1032_00666	NA	NA
UHGV-0091696_33	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0091696_33	UniRef90	UniRef90_G9RWL4	HTH luxR-type domain-containing protein	NA
UHGV-0091696_33	eggNOG-mapper	665956.HMPREF1032_00665	Bacterial regulatory proteins, luxR family	NA
UHGV-0091696_33	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0091696_33	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0091696_33	Structural annotation	PF05183	NA	NA
UHGV-0091696_34	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091696_34	UniRef90	UniRef90_UPI001D06A0CE	NA	NA
UHGV-0091696_34	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-0091696_34	Pfam	PF10926	NA	DUF2800
UHGV-0091696_34	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0091696_35	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0091696_35	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0091696_36	eggNOG-mapper	742818.HMPREF9451_01148	NA	NA
UHGV-0091696_36	Pfam	PF20234	NA	DUF6591
UHGV-0091696_36	Structural annotation	PF20234	NA	NA
UHGV-0091696_38	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0091696_38	eggNOG-mapper	665956.HMPREF1032_00660	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0091696_38	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0091696_38	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0091696_38	Structural annotation	PF12643, MF_01019, NF002747, COG1694	NA	NA
UHGV-0091696_39	PHROG	phrog_17256	NA	unknown function
UHGV-0091696_39	eggNOG-mapper	665950.HMPREF1025_01937	NA	NA
UHGV-0091696_41	KOfam	K14059	int; integrase	NA
UHGV-0091696_41	PHROG	phrog_1	integrase	integration and excision
UHGV-0091696_41	UniRef90	UniRef90_A0A173RTF4	Site-specific recombinase XerD	NA
UHGV-0091696_41	eggNOG-mapper	665956.HMPREF1032_00622	Belongs to the 'phage' integrase family	NA
UHGV-0091696_41	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091696_41	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091696_41	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0091696_42	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0091696_42	UniRef90	UniRef90_A0A2V2CBZ6	HTH cro/C1-type domain-containing protein	NA
UHGV-0091696_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091696_42	Pfam	PF20124	NA	DUF6514