UHGV-0091751

Genome information

Genome length 40,180 bps

CDS count 73

Completeness 90.26% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091751
vOTU ID	vOTU-062555
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_200562
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.92
Jumbo phage	No

Genome content
Genome length	40,180 bps
GC content	36.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	91.07%
Average CDS length	503.92 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091751_1	PHROG	phrog_87	metallo-protease	other
UHGV-0091751_1	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0091751_1	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0091751_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0091751_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0091751_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0091751_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091751_2	UniRef90	UniRef90_UPI001570EBDA	helix-turn-helix transcriptional regulator	NA
UHGV-0091751_2	eggNOG-mapper	610130.Closa_1361	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091751_2	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0091751_2	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0091751_2	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0091751_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091751_3	UniRef90	UniRef90_A0A417V5F3	XRE family transcriptional regulator	NA
UHGV-0091751_3	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0091751_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091751_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0091751_3	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0091751_6	PHROG	phrog_36464	NA	unknown function
UHGV-0091751_6	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0091751_6	Structural annotation	PF09035	NA	NA
UHGV-0091751_10	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091751_10	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-0091751_10	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0091751_10	Pfam	PF04404	ERF superfamily	ERF
UHGV-0091751_10	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0091751_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0091751_11	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0091751_11	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0091751_11	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0091751_12	PHROG	phrog_7566	NA	unknown function
UHGV-0091751_12	UniRef90	UniRef90_A0A374AGN9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0091751_12	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0091751_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0091751_13	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0091751_13	UniRef90	UniRef90_A0A173TYT6	Endodeoxyribonuclease RusA	NA
UHGV-0091751_13	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0091751_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0091751_13	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0091751_14	PHROG	phrog_16304	NA	unknown function
UHGV-0091751_14	UniRef90	UniRef90_UPI001A9ACC6F	NA	NA
UHGV-0091751_14	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0091751_14	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0091751_15	PHROG	phrog_1123	NA	unknown function
UHGV-0091751_15	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0091751_15	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0091751_15	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0091751_16	UniRef90	UniRef90_A0A173TZ35	Transposase	NA
UHGV-0091751_16	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0091751_16	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0091751_16	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0091751_18	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0091751_24	PHROG	phrog_1672	NA	unknown function
UHGV-0091751_24	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-0091751_24	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0091751_27	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0091751_28	Structural annotation	PF14084	NA	NA
UHGV-0091751_31	UniRef90	UniRef90_A0A173U128	Transcriptional regulator, y4mF family	NA
UHGV-0091751_36	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091751_36	UniRef90	UniRef90_A0A1C6HBF7	AP2 domain	NA
UHGV-0091751_36	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0091751_36	Pfam	PF00847	AP2 domain	AP2
UHGV-0091751_36	Structural annotation	PF00847, MF_01580, NF007510	NA	NA
UHGV-0091751_41	UniRef90	UniRef90_A0A173TX46	HTH cro/C1-type domain-containing protein	NA
UHGV-0091751_41	eggNOG-mapper	397291.C804_01058	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0091751_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091751_41	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0091751_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091751_43	UniRef90	UniRef90_A0A173U068	AP2 domain	NA
UHGV-0091751_43	eggNOG-mapper	1437363.A0A090C6M5_9CAUD	HNH endonuclease	NA
UHGV-0091751_43	Pfam	PF00847	AP2 domain	AP2
UHGV-0091751_43	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0091751_45	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0091751_46	PHROG	phrog_33130	NA	unknown function
UHGV-0091751_46	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0091751_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091751_47	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0091751_47	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0091751_47	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0091751_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0091751_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0091751_47	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0091751_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0091751_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091751_47	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0091751_49	PHROG	phrog_533	portal protein	head and packaging
UHGV-0091751_49	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0091751_49	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0091751_49	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0091751_50	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0091751_50	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0091751_50	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0091751_50	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0091751_50	COG	COG2369	NA	NA
UHGV-0091751_50	Structural annotation	PF06152	NA	NA
UHGV-0091751_51	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0091751_52	PHROG	phrog_918	NA	unknown function
UHGV-0091751_52	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0091751_52	eggNOG-mapper	1225795.K4I1W7_9CAUD	NA	NA
UHGV-0091751_52	Pfam	PF19791	NA	DUF6275
UHGV-0091751_52	Structural annotation	PF19791	NA	NA
UHGV-0091751_53	PHROG	phrog_1048	NA	unknown function
UHGV-0091751_53	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0091751_54	PHROG	phrog_419	NA	unknown function
UHGV-0091751_54	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0091751_54	Structural annotation	PF14083	NA	NA
UHGV-0091751_55	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0091751_55	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0091751_56	PHROG	phrog_247	major head protein	head and packaging
UHGV-0091751_56	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0091751_56	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0091751_56	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0091751_57	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0091751_57	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0091751_58	PHROG	phrog_1233	NA	unknown function
UHGV-0091751_58	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0091751_59	PHROG	phrog_3366	NA	unknown function
UHGV-0091751_59	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0091751_59	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0091751_60	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0091751_60	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0091751_60	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0091751_60	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0091751_60	Structural annotation	PF11114	NA	NA
UHGV-0091751_61	PHROG	phrog_3266	tail completion	connector
UHGV-0091751_61	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0091751_61	Structural annotation	PF12691	NA	NA
UHGV-0091751_62	PHROG	phrog_3099	NA	unknown function
UHGV-0091751_62	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0091751_62	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0091751_63	PHROG	phrog_11299	NA	unknown function
UHGV-0091751_63	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0091751_63	Structural annotation	PF10666	NA	NA
UHGV-0091751_64	PHROG	phrog_706	NA	unknown function
UHGV-0091751_64	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0091751_64	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0091751_64	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0091751_64	Structural annotation	PF06854	NA	NA
UHGV-0091751_65	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0091751_65	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0091751_65	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0091751_65	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0091751_65	COG	COG5412	Phage-related protein	NA
UHGV-0091751_65	Structural annotation	PF11172	NA	NA
UHGV-0091751_66	PHROG	phrog_1194	NA	unknown function
UHGV-0091751_66	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0091751_67	PHROG	phrog_6616	tail protein	tail
UHGV-0091751_67	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0091751_67	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0091751_67	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0091751_68	PHROG	phrog_18444	NA	unknown function
UHGV-0091751_72	PHROG	phrog_962	holin	lysis
UHGV-0091751_72	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0091751_72	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0091751_72	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0091751_72	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0091751_72	COG	COG5546	NA	NA
UHGV-0091751_72	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-0091751_73	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0091751_73	PHROG	phrog_670	endolysin	lysis
UHGV-0091751_73	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0091751_73	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0091751_73	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091751_73	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0091751_73	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0091751_73	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA