UHGV-0091758

Genome information

Genome length 28,376 bps

CDS count 40

Completeness 73.84% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091758
vOTU ID	vOTU-025027
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_168938
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.16
Jumbo phage	No

Genome content
Genome length	28,376 bps
GC content	38.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	93.08%
Average CDS length	662.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091758_1	PHROG	phrog_17690	NA	unknown function
UHGV-0091758_1	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0091758_1	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0091758_5	PHROG	phrog_31515	NA	unknown function
UHGV-0091758_5	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0091758_7	PHROG	phrog_21101	NA	unknown function
UHGV-0091758_7	UniRef90	UniRef90_D4MWL6	NA	NA
UHGV-0091758_7	eggNOG-mapper	592028.GCWU000321_00789	NA	NA
UHGV-0091758_7	Pfam	PF07866	NA	DUF1653
UHGV-0091758_7	COG	COG4728	NA	NA
UHGV-0091758_7	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0091758_8	UniRef90	UniRef90_A0A374AM63	NA	NA
UHGV-0091758_8	Pfam	PF12664	NA	DUF3789
UHGV-0091758_10	PHROG	phrog_30258	NA	unknown function
UHGV-0091758_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091758_11	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0091758_11	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0091758_11	Structural annotation	PF02996	NA	NA
UHGV-0091758_12	PHROG	phrog_1048	NA	unknown function
UHGV-0091758_12	UniRef90	UniRef90_A0A417V882	NA	NA
UHGV-0091758_12	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0091758_12	Pfam	PF11195	NA	DUF2829
UHGV-0091758_12	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0091758_12	Structural annotation	PF11195	NA	NA
UHGV-0091758_13	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0091758_13	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0091758_13	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0091758_14	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0091758_14	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0091758_14	UniRef90	UniRef90_A0A417V811	Terminase small subunit	NA
UHGV-0091758_14	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0091758_14	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0091758_14	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0091758_14	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0091758_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091758_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0091758_15	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0091758_15	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0091758_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091758_15	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0091758_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0091758_16	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-0091758_16	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0091758_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0091758_17	PHROG	phrog_25639	NA	unknown function
UHGV-0091758_17	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0091758_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0091758_18	UniRef90	UniRef90_UPI0015715021	minor capsid protein	NA
UHGV-0091758_18	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0091758_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0091758_18	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0091758_18	Structural annotation	PF06152	NA	NA
UHGV-0091758_20	Structural annotation	PF20873	NA	NA
UHGV-0091758_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0091758_21	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0091758_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0091758_22	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0091758_22	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0091758_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0091758_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0091758_23	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0091758_24	PHROG	phrog_8710	NA	unknown function
UHGV-0091758_24	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0091758_24	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0091758_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0091758_25	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0091758_26	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0091758_26	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0091758_26	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0091758_26	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0091758_26	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0091758_27	PHROG	phrog_820	major tail protein	tail
UHGV-0091758_27	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0091758_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0091758_28	PHROG	phrog_8300	NA	unknown function
UHGV-0091758_28	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0091758_28	Structural annotation	PF06854	NA	NA
UHGV-0091758_29	PHROG	phrog_8355	NA	unknown function
UHGV-0091758_29	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0091758_29	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0091758_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0091758_30	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0091758_30	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0091758_30	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0091758_30	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0091758_31	PHROG	phrog_1194	NA	unknown function
UHGV-0091758_31	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0091758_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0091758_32	PHROG	phrog_1401	NA	unknown function
UHGV-0091758_32	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0091758_32	Structural annotation	PF07761	NA	NA
UHGV-0091758_33	PHROG	phrog_16267	NA	unknown function
UHGV-0091758_33	UniRef90	UniRef90_UPI00156FBBAC	tail fiber domain-containing protein	NA
UHGV-0091758_33	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0091758_33	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0091758_33	COG	COG4926	Phage-related protein	NA
UHGV-0091758_34	PHROG	phrog_2566	NA	unknown function
UHGV-0091758_34	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0091758_35	PHROG	phrog_937	hemolysin	other
UHGV-0091758_35	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-0091758_36	PHROG	phrog_443	holin	lysis
UHGV-0091758_36	UniRef90	UniRef90_UPI001BA9F6DF	holin	NA
UHGV-0091758_36	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0091758_36	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0091758_36	Structural annotation	PF16945	NA	NA
UHGV-0091758_37	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091758_37	PHROG	phrog_435	endolysin	lysis
UHGV-0091758_37	UniRef90	UniRef90_UPI000985947E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091758_37	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0091758_37	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0091758_37	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091758_37	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0091758_38	KOfam	K14059	int; integrase	NA
UHGV-0091758_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0091758_38	UniRef90	UniRef90_A0A173RTF4	Site-specific recombinase XerD	NA
UHGV-0091758_38	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0091758_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0091758_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091758_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091758_38	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0091758_39	UniRef90	UniRef90_A0A173RTG3	Bacterial Ig-like domain (Group 2)	NA
UHGV-0091758_39	eggNOG-mapper	1449050.JNLE01000003_gene3872	Bacterial Ig-like domain (group 2)	NA
UHGV-0091758_39	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0091758_39	Structural annotation	PF02368, NF005261, COG3121	NA	NA
UHGV-0091758_40	UniRef90	UniRef90_A0A417V8U5	BIG2 domain-containing protein	NA
UHGV-0091758_40	eggNOG-mapper	397290.C810_01424	NA	NA