UHGV-0091817

Genome information

Genome length 40,182 bps

CDS count 51

Completeness 99.65% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091817
vOTU ID	vOTU-008114
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170381
BioSample	SAMEA3136719
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.15
Jumbo phage	No

Genome content
Genome length	40,182 bps
GC content	39.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.24%
Average CDS length	729.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091817_1	Pfam	PF20124	NA	DUF6514
UHGV-0091817_1	Structural annotation	PF20124	NA	NA
UHGV-0091817_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091817_2	PHROG	phrog_670	endolysin	lysis
UHGV-0091817_2	UniRef90	UniRef90_A0A1C6BSR2	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0091817_2	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0091817_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091817_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0091817_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0091817_3	PHROG	phrog_443	holin	lysis
UHGV-0091817_3	UniRef90	UniRef90_UPI000C088FD8	holin	NA
UHGV-0091817_3	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0091817_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0091817_3	Structural annotation	PF16945	NA	NA
UHGV-0091817_4	PHROG	phrog_937	hemolysin	other
UHGV-0091817_4	eggNOG-mapper	693746.OBV_19000	NA	NA
UHGV-0091817_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0091817_7	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0091817_10	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0091817_10	UniRef90	UniRef90_R6MAF8	NA	NA
UHGV-0091817_10	eggNOG-mapper	272563.CD630_29480	ORF6N domain	NA
UHGV-0091817_10	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0091817_10	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0091817_10	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0091817_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0091817_12	UniRef90	UniRef90_UPI001D08AB64	Bro-N domain-containing protein	NA
UHGV-0091817_12	eggNOG-mapper	1304866.K413DRAFT_1246	BRO family, N-terminal domain	NA
UHGV-0091817_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0091817_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0091817_12	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0091817_13	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0091817_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091817_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0091817_14	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0091817_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091817_14	UniRef90	UniRef90_R6MKU8	Transcriptional regulator XRE family	NA
UHGV-0091817_14	eggNOG-mapper	1499683.CCFF01000017_gene2619	sequence-specific DNA binding	NA
UHGV-0091817_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091817_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0091817_14	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0091817_15	UniRef90	UniRef90_A0A316P9E8	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-0091817_15	eggNOG-mapper	1408422.JHYF01000017_gene1892	NA	NA
UHGV-0091817_15	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0091817_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091817_16	UniRef90	UniRef90_R6MQW9	Phage minor structural protein	NA
UHGV-0091817_16	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-0091817_16	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0091817_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091817_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091817_16	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0091817_16	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0091817_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091817_17	UniRef90	UniRef90_R6MKV6	Phage-related protein	NA
UHGV-0091817_17	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0091817_17	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0091817_18	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0091817_18	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0091817_18	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-0091817_18	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0091817_18	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0091817_18	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0091817_18	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0091817_20	PHROG	phrog_88	major tail protein	tail
UHGV-0091817_20	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0091817_20	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-0091817_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091817_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0091817_21	PHROG	phrog_78	tail terminator	connector
UHGV-0091817_21	eggNOG-mapper	1209989.TepiRe1_1156	NA	NA
UHGV-0091817_21	Structural annotation	PF05657	NA	NA
UHGV-0091817_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091817_22	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0091817_22	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0091817_22	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091817_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0091817_22	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0091817_23	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0091817_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0091817_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091817_24	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0091817_24	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0091817_24	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0091817_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0091817_24	Structural annotation	PF05135	NA	NA
UHGV-0091817_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091817_25	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091817_25	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0091817_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091817_25	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0091817_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091817_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091817_25	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091817_26	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0091817_26	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0091817_26	eggNOG-mapper	1122925.KB895382_gene3574	NA	NA
UHGV-0091817_26	Pfam	PF14265	NA	DUF4355
UHGV-0091817_26	Structural annotation	PF14265	NA	NA
UHGV-0091817_27	Structural annotation	PF00677, NF009627, COG3277	NA	NA
UHGV-0091817_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0091817_28	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0091817_28	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0091817_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0091817_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0091817_28	COG	COG2369	NA	NA
UHGV-0091817_28	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0091817_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0091817_29	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0091817_29	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0091817_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0091817_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0091817_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0091817_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091817_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0091817_30	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0091817_30	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0091817_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0091817_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0091817_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0091817_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091817_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0091817_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0091817_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0091817_31	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0091817_31	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0091817_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0091817_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0091817_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0091817_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091817_33	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0091817_33	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0091817_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0091817_33	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0091817_34	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0091817_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0091817_34	UniRef90	UniRef90_A0A1C5PHR3	DNA methylase	NA
UHGV-0091817_34	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0091817_34	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0091817_34	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0091817_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0091817_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0091817_34	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0091817_35	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091817_35	UniRef90	UniRef90_A0A373Q1P2	VRR-NUC domain-containing protein	NA
UHGV-0091817_35	eggNOG-mapper	938278.CAJO01000077_gene1242	VRR-NUC domain protein	NA
UHGV-0091817_35	Structural annotation	PF08774, MF_00130, NF002584	NA	NA
UHGV-0091817_36	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0091817_36	UniRef90	UniRef90_A0A1C5PGM9	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0091817_36	eggNOG-mapper	536232.CLM_2670	virulence-associated E family protein	NA
UHGV-0091817_36	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0091817_36	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0091817_36	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0091817_37	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0091817_37	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0091817_37	UniRef90	UniRef90_A0A1C5PHE9	DNA polymerase I, thermostable	NA
UHGV-0091817_37	eggNOG-mapper	1414720.CBYM010000005_gene1353	DNA polymerase	NA
UHGV-0091817_37	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0091817_37	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0091817_37	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0091817_38	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091817_38	UniRef90	UniRef90_A0A412UNI7	NA	NA
UHGV-0091817_38	eggNOG-mapper	1540257.JQMW01000004_gene440	NA	NA
UHGV-0091817_38	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0091817_38	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0091817_39	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091817_39	UniRef90	UniRef90_A0A358NI58	NA	NA
UHGV-0091817_39	eggNOG-mapper	1029718.SFBM_0102	NA	NA
UHGV-0091817_39	Pfam	PF10926	NA	DUF2800
UHGV-0091817_39	COG	COG2887	RecB family exonuclease	NA
UHGV-0091817_39	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0091817_46	UniRef90	UniRef90_R6MGJ6	HTH_17 domain-containing protein	NA
UHGV-0091817_46	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0091817_46	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0091817_47	UniRef90	UniRef90_UPI00164CCC30	NA	NA
UHGV-0091817_47	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0091817_47	Pfam	PF05339	NA	DUF739
UHGV-0091817_47	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0091817_48	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0091817_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0091817_48	UniRef90	UniRef90_UPI0016485B88	XRE family transcriptional regulator	NA
UHGV-0091817_48	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0091817_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091817_48	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0091817_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0091817_48	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0091817_49	PHROG	phrog_16607	NA	unknown function
UHGV-0091817_49	eggNOG-mapper	521095.Apar_0190	NA	NA
UHGV-0091817_51	KOfam	K14059	int; integrase	NA
UHGV-0091817_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0091817_51	UniRef90	UniRef90_R6M673	Putative integrase-phage associated	NA
UHGV-0091817_51	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0091817_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0091817_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091817_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091817_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA