UHGV-0091833

Genome information

Genome length 32,130 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091833
vOTU ID	vOTU-060231
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194616
BioSample	SAMEA3449315
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.47
Jumbo phage	No

Genome content
Genome length	32,130 bps
GC content	50.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.02%
Average CDS length	598.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091833_1	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0091833_1	UniRef90	UniRef90_A0A6A8VJ07	NA	NA
UHGV-0091833_1	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-0091833_1	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0091833_1	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0091833_9	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0091833_9	UniRef90	UniRef90_UPI001897B4BF	NA	NA
UHGV-0091833_9	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0091833_9	Pfam	PF06048	NA	DUF927
UHGV-0091833_9	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0091833_9	COG	COG5519	NA	NA
UHGV-0091833_9	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0091833_10	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0091833_10	UniRef90	UniRef90_A0A1C6FNZ9	Hef nuclease	NA
UHGV-0091833_10	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0091833_10	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0091833_10	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0091833_10	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0091833_11	UniRef90	UniRef90_A0A6B1UF99	NA	NA
UHGV-0091833_11	Pfam	PF05037	NA	DUF669
UHGV-0091833_11	Structural annotation	PF05037	NA	NA
UHGV-0091833_12	UniRef90	UniRef90_A0A2Z4QA33	PD-(D/E)XK nuclease	NA
UHGV-0091833_12	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0091833_12	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0091833_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091833_13	UniRef90	UniRef90_A0A6B1UF33	AAA family ATPase	NA
UHGV-0091833_13	eggNOG-mapper	718252.FP2_01060	AAA domain	NA
UHGV-0091833_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0091833_13	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0091833_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0091833_15	PHROG	phrog_4433	NA	unknown function
UHGV-0091833_15	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0091833_15	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0091833_15	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0091833_17	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0091833_21	eggNOG-mapper	382464.ABSI01000009_gene3910	NA	NA
UHGV-0091833_22	PHROG	phrog_25289	NA	unknown function
UHGV-0091833_22	UniRef90	UniRef90_UPI00191F6BB9	phage antirepressor KilAC domain-containing protein	NA
UHGV-0091833_22	eggNOG-mapper	1499683.CCFF01000006_gene33	Phage antirepressor protein	NA
UHGV-0091833_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0091833_22	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0091833_23	KOfam	K14059	int; integrase	NA
UHGV-0091833_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0091833_23	UniRef90	UniRef90_A0A1C5SM44	Tyrosine recombinase XerC	NA
UHGV-0091833_23	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0091833_23	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0091833_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091833_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0091833_23	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0091833_24	Structural annotation	PF05973, TIGR02683, COG3657	NA	NA
UHGV-0091833_25	PHROG	phrog_2339	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0091833_25	UniRef90	UniRef90_A0A542AK97	Helix-turn-helix protein	NA
UHGV-0091833_25	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091833_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091833_25	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0091833_25	Structural annotation	PF13744, MF_00535, TIGR03070, COG5606	NA	NA
UHGV-0091833_26	UniRef90	UniRef90_UPI001EFFB401	protein-export chaperone SecB	NA
UHGV-0091833_26	eggNOG-mapper	351627.Csac_0627	NA	NA
UHGV-0091833_26	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-0091833_27	PHROG	phrog_20258	NA	unknown function
UHGV-0091833_27	eggNOG-mapper	665956.HMPREF1032_02710	NA	NA
UHGV-0091833_28	PHROG	phrog_4105	NA	unknown function
UHGV-0091833_28	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0091833_29	PHROG	phrog_435	endolysin	lysis
UHGV-0091833_29	UniRef90	UniRef90_A0A3D0M2V0	MurNAc-LAA domain-containing protein	NA
UHGV-0091833_29	eggNOG-mapper	1105031.HMPREF1141_2950	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091833_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0091833_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091833_30	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0091833_30	UniRef90	UniRef90_A0A6I6D521	Arylesterase	NA
UHGV-0091833_30	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0091833_30	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0091833_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091833_32	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0091833_32	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0091833_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091833_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091833_32	COG	COG4926	Phage-related protein	NA
UHGV-0091833_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091833_33	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0091833_33	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0091833_33	UniRef90	UniRef90_A0A316NM27	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0091833_33	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0091833_33	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0091833_33	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0091833_33	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0091833_34	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0091833_34	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0091833_34	UniRef90	UniRef90_A0A316NLB7	HicB family protein	NA
UHGV-0091833_34	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0091833_34	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0091833_34	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0091833_34	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0091833_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091833_35	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0091833_35	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0091833_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091833_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091833_36	PHROG	phrog_23464	NA	unknown function
UHGV-0091833_36	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0091833_36	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0091833_36	Pfam	PF05017	TMP repeat	TMP
UHGV-0091833_36	COG	COG5412	Phage-related protein	NA
UHGV-0091833_36	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0091833_37	PHROG	phrog_709	NA	unknown function
UHGV-0091833_37	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0091833_37	Structural annotation	PF11836	NA	NA
UHGV-0091833_38	PHROG	phrog_88	major tail protein	tail
UHGV-0091833_38	UniRef90	UniRef90_A0A1C6H6F0	Phage major tail protein, phi13 family	NA
UHGV-0091833_38	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0091833_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0091833_38	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0091833_39	PHROG	phrog_78	tail terminator	connector
UHGV-0091833_39	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0091833_39	eggNOG-mapper	1226322.HMPREF1545_00120	NA	NA
UHGV-0091833_39	Structural annotation	PF20765	NA	NA
UHGV-0091833_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0091833_40	UniRef90	UniRef90_UPI00073E355A	HK97 gp10 family phage protein	NA
UHGV-0091833_40	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0091833_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0091833_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0091833_41	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0091833_41	UniRef90	UniRef90_A0A8J6P6R3	Phage head-tail adapter protein	NA
UHGV-0091833_41	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0091833_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091833_42	PHROG	phrog_5223	neck protein	connector
UHGV-0091833_42	UniRef90	UniRef90_A0A8J6P3F9	Phage gp6-like head-tail connector protein	NA
UHGV-0091833_42	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-0091833_42	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0091833_42	Structural annotation	TIGR01560	NA	NA
UHGV-0091833_43	eggNOG-mapper	476272.RUMHYD_02855	NA	NA
UHGV-0091833_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091833_44	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0091833_44	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0091833_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091833_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091833_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0091833_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091833_45	KOfam	K06904	NA	NA
UHGV-0091833_45	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0091833_45	UniRef90	UniRef90_A0A1V5IPN6	Caudovirus prohead protease	NA
UHGV-0091833_45	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0091833_45	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0091833_45	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0091833_45	COG	COG3740	Phage head maturation protease	NA
UHGV-0091833_45	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0091833_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091833_46	UniRef90	UniRef90_A0A8J6PFS2	Phage portal protein	NA
UHGV-0091833_46	eggNOG-mapper	411471.SUBVAR_05850	Phage portal protein	NA
UHGV-0091833_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091833_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091833_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091833_47	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091833_47	UniRef90	UniRef90_A0A8J6TY49	Terminase large subunit	NA
UHGV-0091833_47	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-0091833_47	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0091833_47	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091833_47	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091833_47	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091833_48	PHROG	phrog_1066	NA	unknown function
UHGV-0091833_48	eggNOG-mapper	1094508.Tsac_2428	NA	NA