UHGV-0091864

Genome information

Genome length 42,121 bps

CDS count 69

Completeness 93.38% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091864
vOTU ID	vOTU-075925
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_199872
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.96
Jumbo phage	No

Genome content
Genome length	42,121 bps
GC content	41.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	89.94%
Average CDS length	553.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091864_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0091864_1	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-0091864_1	UniRef90	UniRef90_D3ANA1	Terminase_3C domain-containing protein (Fragment)	NA
UHGV-0091864_1	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0091864_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0091864_1	Structural annotation	PF17288	NA	NA
UHGV-0091864_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0091864_2	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0091864_2	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0091864_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0091864_3	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0091864_3	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0091864_3	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0091864_3	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0091864_3	COG	COG2369	NA	NA
UHGV-0091864_3	Structural annotation	PF06152	NA	NA
UHGV-0091864_4	PHROG	phrog_3754	NA	unknown function
UHGV-0091864_4	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0091864_5	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0091864_5	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0091864_6	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0091864_6	PHROG	phrog_2104	NA	unknown function
UHGV-0091864_6	UniRef90	UniRef90_A0A412ELA1	Helix-turn-helix domain-containing protein	NA
UHGV-0091864_6	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091864_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0091864_6	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0091864_6	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0091864_8	PHROG	phrog_21718	NA	unknown function
UHGV-0091864_8	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0091864_9	PHROG	phrog_22984	NA	unknown function
UHGV-0091864_10	PHROG	phrog_16490	NA	unknown function
UHGV-0091864_10	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0091864_11	PHROG	phrog_20016	NA	unknown function
UHGV-0091864_11	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0091864_11	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0091864_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0091864_12	PHROG	phrog_28802	NA	unknown function
UHGV-0091864_12	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0091864_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0091864_13	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0091864_13	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0091864_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0091864_13	Structural annotation	PF06810	NA	NA
UHGV-0091864_14	PHROG	phrog_544	major head protein	head and packaging
UHGV-0091864_14	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0091864_14	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0091864_14	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0091864_14	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0091864_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0091864_15	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0091864_17	PHROG	phrog_1129	holin	lysis
UHGV-0091864_17	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0091864_17	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0091864_17	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0091864_17	Structural annotation	PF06946	NA	NA
UHGV-0091864_18	PHROG	phrog_3366	NA	unknown function
UHGV-0091864_18	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0091864_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0091864_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0091864_19	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0091864_19	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0091864_19	Structural annotation	PF11114	NA	NA
UHGV-0091864_20	PHROG	phrog_3266	tail completion	connector
UHGV-0091864_20	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0091864_20	Structural annotation	PF12691	NA	NA
UHGV-0091864_21	PHROG	phrog_3099	NA	unknown function
UHGV-0091864_21	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0091864_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0091864_22	PHROG	phrog_11299	NA	unknown function
UHGV-0091864_22	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0091864_22	Structural annotation	PF10666	NA	NA
UHGV-0091864_23	PHROG	phrog_706	NA	unknown function
UHGV-0091864_23	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0091864_23	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0091864_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0091864_23	Structural annotation	PF06854	NA	NA
UHGV-0091864_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0091864_24	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0091864_24	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0091864_24	COG	COG1511	NA	NA
UHGV-0091864_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0091864_25	PHROG	phrog_1194	NA	unknown function
UHGV-0091864_25	eggNOG-mapper	394503.Ccel_3034	NA	NA
UHGV-0091864_25	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0091864_26	PHROG	phrog_6616	tail protein	tail
UHGV-0091864_26	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-0091864_26	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0091864_26	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0091864_27	PHROG	phrog_18444	NA	unknown function
UHGV-0091864_27	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0091864_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0091864_29	PHROG	phrog_6745	endolysin	lysis
UHGV-0091864_29	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0091864_29	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0091864_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0091864_29	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0091864_29	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0091864_29	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-0091864_30	KOfam	K14059	int; integrase	NA
UHGV-0091864_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0091864_30	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0091864_30	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0091864_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0091864_30	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0091864_31	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0091864_31	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0091864_31	eggNOG-mapper	742740.HMPREF9474_03479	tRNA_anti-like	NA
UHGV-0091864_31	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0091864_31	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0091864_34	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0091864_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0091864_34	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0091864_34	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0091864_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0091864_34	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0091864_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0091864_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0091864_36	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0091864_39	PHROG	phrog_6058	NA	unknown function
UHGV-0091864_39	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0091864_39	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0091864_40	AcrCatalog	cluster_17974	NA	NA
UHGV-0091864_44	Structural annotation	NF011879	NA	NA
UHGV-0091864_45	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0091864_46	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0091864_46	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0091864_46	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0091864_47	PHROG	phrog_18107	NA	unknown function
UHGV-0091864_47	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0091864_47	Structural annotation	PF05037	NA	NA
UHGV-0091864_48	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0091864_48	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0091864_48	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0091864_48	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0091864_48	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0091864_49	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0091864_49	PHROG	phrog_11992	NA	unknown function
UHGV-0091864_49	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0091864_49	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0091864_49	PADLOC	drt-UG29	DRT	DRT
UHGV-0091864_49	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0091864_49	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0091864_49	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0091864_50	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0091864_50	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0091864_50	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0091864_50	Pfam	PF06048	NA	DUF927
UHGV-0091864_50	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0091864_50	COG	COG5519	NA	NA
UHGV-0091864_50	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0091864_51	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0091864_51	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0091864_51	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0091864_51	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-0091864_51	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0091864_51	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0091864_51	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0091864_51	Structural annotation	PF05970, PF18350, MF_03176, TIGR02768, COG0507	NA	NA
UHGV-0091864_53	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0091864_53	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0091864_55	PHROG	phrog_17690	NA	unknown function
UHGV-0091864_55	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0091864_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0091864_56	UniRef90	UniRef90_A0A373DE70	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0091864_56	eggNOG-mapper	1304866.K413DRAFT_1205	sulfate reduction	NA
UHGV-0091864_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0091864_58	Structural annotation	PF17888	NA	NA
UHGV-0091864_59	PHROG	phrog_15198	NA	unknown function
UHGV-0091864_59	UniRef90	UniRef90_UPI001D099705	NA	NA
UHGV-0091864_59	Pfam	PF04448	NA	DUF551
UHGV-0091864_63	PHROG	phrog_20593	NA	unknown function
UHGV-0091864_64	PHROG	phrog_874	NA	unknown function
UHGV-0091864_64	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0091864_64	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0091864_64	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0091864_65	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0091864_68	eggNOG-mapper	1235793.C809_02210	NA	NA