UHGV-0091865

Genome information

Genome length 25,292 bps

CDS count 37

Completeness 100.00% (complete)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0091865
vOTU ID	vOTU-045322
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201195
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.34
Jumbo phage	No

Genome content
Genome length	25,292 bps
GC content	40.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.78%
Average CDS length	637.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0091865_1	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0091865_1	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0091865_1	UniRef90	UniRef90_A0A373XPG0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0091865_1	eggNOG-mapper	1396.DJ87_978	Clp protease	NA
UHGV-0091865_1	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0091865_1	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0091865_1	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0091865_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-0091865_2	UniRef90	UniRef90_A0A373XLR3	Phage major capsid protein	NA
UHGV-0091865_2	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0091865_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0091865_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0091865_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0091865_3	PHROG	phrog_5223	neck protein	connector
UHGV-0091865_3	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0091865_3	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0091865_4	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0091865_4	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-0091865_4	eggNOG-mapper	1536769.P40081_01090	head-tail adaptor	NA
UHGV-0091865_4	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0091865_4	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0091865_4	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0091865_5	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0091865_5	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0091865_5	Structural annotation	TIGR01725	NA	NA
UHGV-0091865_6	Structural annotation	PF12691	NA	NA
UHGV-0091865_7	PHROG	phrog_885	major tail protein	tail
UHGV-0091865_7	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0091865_7	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0091865_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0091865_8	PHROG	phrog_1021	NA	unknown function
UHGV-0091865_10	PHROG	phrog_23464	NA	unknown function
UHGV-0091865_10	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0091865_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0091865_10	Structural annotation	COG3941	NA	NA
UHGV-0091865_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0091865_11	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0091865_11	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0091865_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0091865_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0091865_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0091865_12	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0091865_12	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0091865_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0091865_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0091865_12	COG	COG4926	Phage-related protein	NA
UHGV-0091865_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0091865_13	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0091865_13	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0091865_13	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0091865_15	PHROG	phrog_199	holin	lysis
UHGV-0091865_15	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0091865_15	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0091865_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0091865_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0091865_15	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0091865_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0091865_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0091865_16	PHROG	phrog_20388	endolysin	lysis
UHGV-0091865_16	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091865_16	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091865_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0091865_16	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0091865_16	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0091865_16	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0091865_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0091865_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0091865_17	UniRef90	UniRef90_A0A374DDR5	Methyltransferase	NA
UHGV-0091865_17	eggNOG-mapper	877240.E1AC06_9CAUD	helicase activity	NA
UHGV-0091865_17	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0091865_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0091865_17	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0091865_18	UniRef90	UniRef90_UPI001B3C704F	helix-turn-helix domain-containing protein	NA
UHGV-0091865_18	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0091865_20	KOfam	K14059	int; integrase	NA
UHGV-0091865_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0091865_20	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0091865_20	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0091865_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0091865_20	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0091865_20	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0091865_21	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0091865_22	PHROG	phrog_1914	NA	unknown function
UHGV-0091865_22	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0091865_22	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0091865_22	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0091865_22	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0091865_22	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0091865_23	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0091865_23	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0091865_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091865_23	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0091865_24	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0091865_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0091865_24	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0091865_25	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0091865_25	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0091865_25	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0091865_25	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0091865_25	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0091865_25	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0091865_28	PHROG	phrog_8470	NA	unknown function
UHGV-0091865_28	UniRef90	UniRef90_UPI0018E45158	PcfJ domain-containing protein	NA
UHGV-0091865_28	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0091865_28	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0091865_28	Structural annotation	PF14284	NA	NA
UHGV-0091865_29	PHROG	phrog_15609	NA	unknown function
UHGV-0091865_29	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0091865_29	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0091865_29	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0091865_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0091865_31	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0091865_31	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0091865_32	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0091865_32	Structural annotation	TIGR01636	NA	NA
UHGV-0091865_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0091865_33	UniRef90	UniRef90_A0A373XNZ9	HNH endonuclease	NA
UHGV-0091865_33	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-0091865_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0091865_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0091865_34	PHROG	phrog_1066	NA	unknown function
UHGV-0091865_34	eggNOG-mapper	931276.Cspa_c10130	NA	NA
UHGV-0091865_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0091865_35	UniRef90	UniRef90_A0A373XNY0	Terminase large subunit	NA
UHGV-0091865_35	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0091865_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0091865_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0091865_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0091865_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0091865_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0091865_36	UniRef90	UniRef90_A0A373XNZ6	Phage portal protein	NA
UHGV-0091865_36	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0091865_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0091865_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0091865_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0091865_37	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0091865_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA