UHGV-0092016

Genome information

Genome length 31,110 bps

CDS count 37

Completeness 85.14% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092016
vOTU ID	vOTU-017645
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_191452
BioSample	SAMEA3449363
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.69
Jumbo phage	No

Genome content
Genome length	31,110 bps
GC content	45.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.11%
Average CDS length	759.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092016_1	KOfam	K05833	K05833; putative tryptophan/tyrosine transport system ATP-binding protein	NA
UHGV-0092016_1	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0092016_1	UniRef90	UniRef90_A0A3C1A5E9	ABC transporter ATP-binding protein	NA
UHGV-0092016_1	eggNOG-mapper	1280698.AUJS01000003_gene2571	ATPases associated with a variety of cellular activities	NA
UHGV-0092016_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0092016_1	COG	COG1101	NA	NA
UHGV-0092016_1	Structural annotation	PF00005, MF_00848, TIGR02211, COG1116	NA	NA
UHGV-0092016_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0092016_2	PHROG	phrog_670	endolysin	lysis
UHGV-0092016_2	UniRef90	UniRef90_UPI0015A79365	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092016_2	eggNOG-mapper	1499689.CCNN01000007_gene1846	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092016_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0092016_2	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0092016_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092016_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0092016_3	PHROG	phrog_263	holin	lysis
UHGV-0092016_3	UniRef90	UniRef90_UPI001F05AFD4	phage holin	NA
UHGV-0092016_3	eggNOG-mapper	1121344.JHZO01000004_gene1372	SPP1 phage holin	NA
UHGV-0092016_3	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0092016_3	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0092016_3	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0092016_4	PHROG	phrog_1863	NA	unknown function
UHGV-0092016_4	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0092016_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0092016_5	PHROG	phrog_4775	pre-neck appendage protein	connector
UHGV-0092016_5	eggNOG-mapper	97138.C820_00748	Peptidase_G2, IMC autoproteolytic cleavage domain	NA
UHGV-0092016_5	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-0092016_5	Pfam	PF11962	Peptidase_G2, IMC autoproteolytic cleavage domain	Peptidase_G2
UHGV-0092016_5	COG	COG5295	Autotransporter adhesin	NA
UHGV-0092016_5	Structural annotation	PF11962	NA	NA
UHGV-0092016_8	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0092016_9	PHROG	phrog_134	NA	unknown function
UHGV-0092016_9	UniRef90	UniRef90_A0A7X9H6W0	XkdX family protein	NA
UHGV-0092016_9	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0092016_9	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0092016_9	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0092016_9	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0092016_13	PHROG	phrog_521	tail protein	tail
UHGV-0092016_13	UniRef90	UniRef90_UPI001F319AD3	YmfQ family protein	NA
UHGV-0092016_13	eggNOG-mapper	596329.HMPREF0631_1390	NA	NA
UHGV-0092016_13	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0092016_13	COG	COG3778	NA	NA
UHGV-0092016_13	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0092016_14	PHROG	phrog_6	baseplate protein	tail
UHGV-0092016_14	UniRef90	UniRef90_R6MD36	Baseplate J family protein	NA
UHGV-0092016_14	eggNOG-mapper	1095747.HMPREF1049_1994	Baseplate J-like protein	NA
UHGV-0092016_14	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0092016_14	COG	COG3299	NA	NA
UHGV-0092016_14	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0092016_15	PHROG	phrog_120	baseplate protein	tail
UHGV-0092016_15	UniRef90	UniRef90_UPI00156D767A	NA	NA
UHGV-0092016_15	eggNOG-mapper	641107.CDLVIII_1351	NA	NA
UHGV-0092016_15	Pfam	PF10934	NA	DUF2634
UHGV-0092016_15	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0092016_15	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0092016_16	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0092016_17	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0092016_17	PHROG	phrog_400	tail protein	tail
UHGV-0092016_17	UniRef90	UniRef90_A0A1C5PJS5	Amidase_5 domain-containing protein	NA
UHGV-0092016_17	eggNOG-mapper	293826.Amet_2427	Late control gene D protein	NA
UHGV-0092016_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0092016_17	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0092016_17	COG	COG3500	NA	NA
UHGV-0092016_18	PHROG	phrog_23201	NA	unknown function
UHGV-0092016_18	UniRef90	UniRef90_R6M2K3	SLH domain-containing protein	NA
UHGV-0092016_18	eggNOG-mapper	1449126.JQKL01000051_gene3159	LysM domain	NA
UHGV-0092016_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0092016_19	PHROG	phrog_971	endolysin	lysis
UHGV-0092016_19	UniRef90	UniRef90_A0A8G0NSD2	Phage tail protein	NA
UHGV-0092016_19	eggNOG-mapper	469617.FUAG_00846	tape measure	NA
UHGV-0092016_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0092016_19	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0092016_20	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0092016_20	UniRef90	UniRef90_A0A1V5X8M4	Phage XkdN-like protein	NA
UHGV-0092016_20	eggNOG-mapper	1449126.JQKL01000051_gene3162	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0092016_20	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0092016_21	PHROG	phrog_365	tail protein	tail
UHGV-0092016_21	UniRef90	UniRef90_A0A1V5X8D8	Phage-like element PBSX protein XkdM	NA
UHGV-0092016_21	eggNOG-mapper	445972.ANACOL_00545	Phage tail tube protein	NA
UHGV-0092016_21	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0092016_21	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0092016_22	PHROG	phrog_1480	tail sheath	tail
UHGV-0092016_22	UniRef90	UniRef90_A0A5C0SEH2	Phage tail sheath protein	NA
UHGV-0092016_22	eggNOG-mapper	1449126.JQKL01000051_gene3164	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0092016_22	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0092016_22	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0092016_22	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0092016_23	PHROG	phrog_525	NA	unknown function
UHGV-0092016_23	eggNOG-mapper	1286171.EAL2_c11100	NA	NA
UHGV-0092016_23	Pfam	PF20765	NA	DUF6838
UHGV-0092016_23	Structural annotation	PF20765, COG3167	NA	NA
UHGV-0092016_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0092016_24	UniRef90	UniRef90_UPI001CF90173	HK97 gp10 family phage protein	NA
UHGV-0092016_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0092016_24	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0092016_25	PHROG	phrog_25	head closure Hc1	connector
UHGV-0092016_25	UniRef90	UniRef90_A0A416D170	Head-tail adaptor protein	NA
UHGV-0092016_25	eggNOG-mapper	1449126.JQKL01000051_gene3167	Phage head-tail joining protein	NA
UHGV-0092016_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0092016_25	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0092016_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0092016_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0092016_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0092016_26	UniRef90	UniRef90_A0A316PEY8	Phage major capsid protein	NA
UHGV-0092016_26	eggNOG-mapper	1567013.A0A0A7RTL2_9CAUD	peptidase activity	NA
UHGV-0092016_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0092016_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0092016_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0092016_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0092016_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0092016_27	UniRef90	UniRef90_A0A316PF55	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0092016_27	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0092016_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0092016_27	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0092016_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0092016_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0092016_28	UniRef90	UniRef90_A0A316PCI7	Phage portal protein	NA
UHGV-0092016_28	eggNOG-mapper	1286171.EAL2_c11040	Phage portal protein	NA
UHGV-0092016_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0092016_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0092016_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0092016_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0092016_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0092016_29	UniRef90	UniRef90_UPI00100C2FF2	terminase large subunit	NA
UHGV-0092016_29	eggNOG-mapper	1286171.EAL2_c11030	Phage Terminase	NA
UHGV-0092016_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0092016_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0092016_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0092016_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0092016_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0092016_30	UniRef90	UniRef90_A0A316PT95	Phage terminase small subunit P27 family	NA
UHGV-0092016_30	eggNOG-mapper	1286171.EAL2_c11020	Phage terminase, small subunit	NA
UHGV-0092016_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0092016_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0092016_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0092016_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0092016_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0092016_31	UniRef90	UniRef90_A0A8H9QVG1	Phage gp6-like head-tail connector protein	NA
UHGV-0092016_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0092016_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0092016_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0092016_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0092016_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092016_32	UniRef90	UniRef90_A0A316PCD1	HNH endonuclease	NA
UHGV-0092016_32	eggNOG-mapper	1384057.CD33_14115	HNH nucleases	NA
UHGV-0092016_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0092016_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0092016_32	Structural annotation	PF05766	NA	NA
UHGV-0092016_33	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0092016_33	PHROG	phrog_216	integrase	integration and excision
UHGV-0092016_33	UniRef90	UniRef90_A0A316PIS3	Site-specific integrase	NA
UHGV-0092016_33	eggNOG-mapper	500633.CLOHIR_00361	Site-specific recombinase, phage integrase family	NA
UHGV-0092016_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092016_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0092016_33	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0092016_34	eggNOG-mapper	1196322.A370_01150	transposase activity	NA
UHGV-0092016_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0092016_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0092016_35	PHROG	phrog_21498	NA	unknown function
UHGV-0092016_35	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0092016_35	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0092016_35	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0092016_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0092016_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0092016_35	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0092016_36	AcrCatalog	cluster_86620	NA	NA