UHGV-0092031

Genome information

Genome length 29,177 bps

CDS count 49

Completeness 68.98% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092031
vOTU ID	vOTU-023513
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_171045
BioSample	SAMEA3136747
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.99
Jumbo phage	No

Genome content
Genome length	29,177 bps
GC content	51.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.97%
Average CDS length	565.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092031_2	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0092031_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092031_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0092031_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0092031_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0092031_5	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0092031_5	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0092031_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0092031_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0092031_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0092031_5	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0092031_6	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0092031_7	eggNOG-mapper	397290.C810_05215	NA	NA
UHGV-0092031_7	Structural annotation	PF12510	NA	NA
UHGV-0092031_8	PHROG	phrog_20016	NA	unknown function
UHGV-0092031_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0092031_8	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0092031_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0092031_9	PHROG	phrog_16490	NA	unknown function
UHGV-0092031_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0092031_10	PHROG	phrog_22984	NA	unknown function
UHGV-0092031_11	PHROG	phrog_21718	NA	unknown function
UHGV-0092031_11	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0092031_12	PHROG	phrog_3754	NA	unknown function
UHGV-0092031_12	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0092031_14	AcrCatalog	cluster_39973	NA	NA
UHGV-0092031_15	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0092031_15	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0092031_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092031_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092031_15	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0092031_16	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0092031_18	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0092031_19	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0092031_19	PHROG	phrog_894	endolysin	lysis
UHGV-0092031_19	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0092031_19	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0092031_19	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0092031_19	COG	COG3108	NA	NA
UHGV-0092031_19	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0092031_20	PHROG	phrog_18955	NA	unknown function
UHGV-0092031_20	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0092031_20	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0092031_20	COG	COG1388	LysM repeat	NA
UHGV-0092031_20	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0092031_22	PHROG	phrog_13256	NA	unknown function
UHGV-0092031_22	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0092031_23	UniRef90	UniRef90_A0A845R718	Branched-chain amino acid ABC transporter permease	NA
UHGV-0092031_23	eggNOG-mapper	1235835.C814_01206	NA	NA
UHGV-0092031_24	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0092031_24	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0092031_26	Structural annotation	PF21722, PF07210, TIGR04134	NA	NA
UHGV-0092031_27	PHROG	phrog_18725	NA	unknown function
UHGV-0092031_27	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0092031_29	PHROG	phrog_13879	NA	unknown function
UHGV-0092031_29	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0092031_29	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0092031_30	PHROG	phrog_1194	NA	unknown function
UHGV-0092031_30	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0092031_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0092031_31	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0092031_31	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0092031_31	COG	COG1511	NA	NA
UHGV-0092031_32	PHROG	phrog_7115	NA	unknown function
UHGV-0092031_32	UniRef90	UniRef90_UPI0005D27B94	PH domain-containing protein	NA
UHGV-0092031_32	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0092031_32	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0092031_32	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0092031_33	PHROG	phrog_706	NA	unknown function
UHGV-0092031_33	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0092031_33	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0092031_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0092031_33	Structural annotation	PF06854	NA	NA
UHGV-0092031_34	PHROG	phrog_11299	NA	unknown function
UHGV-0092031_34	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0092031_34	Structural annotation	PF10666	NA	NA
UHGV-0092031_35	PHROG	phrog_3099	NA	unknown function
UHGV-0092031_35	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0092031_35	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0092031_36	PHROG	phrog_3266	tail completion	connector
UHGV-0092031_36	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0092031_36	Structural annotation	PF12691	NA	NA
UHGV-0092031_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0092031_37	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0092031_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0092031_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0092031_37	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0092031_38	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092031_38	UniRef90	UniRef90_A0A7C6W881	GIY-YIG nuclease family protein	NA
UHGV-0092031_38	eggNOG-mapper	1195236.CTER_1910	NUMOD3 motif (2 copies)	NA
UHGV-0092031_38	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0092031_38	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0092031_39	PHROG	phrog_3366	NA	unknown function
UHGV-0092031_39	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0092031_39	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0092031_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0092031_40	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0092031_40	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0092031_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0092031_41	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0092031_41	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0092031_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0092031_41	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0092031_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0092031_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0092031_41	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0092031_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0092031_42	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0092031_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0092031_44	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0092031_44	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0092031_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0092031_44	COG	COG2369	NA	NA
UHGV-0092031_44	Structural annotation	PF06152	NA	NA
UHGV-0092031_45	PHROG	phrog_8680	NA	unknown function
UHGV-0092031_45	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0092031_45	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0092031_45	Pfam	PF14386	NA	DUF4417
UHGV-0092031_45	Structural annotation	PF14386	NA	NA
UHGV-0092031_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-0092031_47	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0092031_47	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0092031_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0092031_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0092031_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092031_48	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0092031_48	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0092031_48	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0092031_48	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0092031_48	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0092031_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0092031_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092031_48	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0092031_49	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0092031_49	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA