UHGV-0092173

Genome information

Genome length 33,303 bps

CDS count 46

Completeness 58.93% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092173
vOTU ID	vOTU-024088
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_178649
BioSample	SAMEA3449373
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.76
Jumbo phage	No

Genome content
Genome length	33,303 bps
GC content	40.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.85%
Average CDS length	667.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092173_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0092173_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092173_1	UniRef90	UniRef90_UPI000F0C363F	single-stranded DNA-binding protein	NA
UHGV-0092173_1	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0092173_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0092173_1	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0092173_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0092173_1	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0092173_1	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0092173_3	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0092173_3	Structural annotation	PF13384	NA	NA
UHGV-0092173_4	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0092173_4	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0092173_6	PHROG	phrog_774	NA	unknown function
UHGV-0092173_6	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0092173_7	eggNOG-mapper	1391647.AVSV01000003_gene1800	NA	NA
UHGV-0092173_8	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0092173_8	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0092173_8	UniRef90	UniRef90_UPI000F0C3462	terminase small subunit	NA
UHGV-0092173_8	eggNOG-mapper	318464.IO99_00540	Terminase small subunit	NA
UHGV-0092173_8	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0092173_8	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0092173_8	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0092173_9	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0092173_9	UniRef90	UniRef90_UPI0018D54757	phage terminase large subunit	NA
UHGV-0092173_9	eggNOG-mapper	1499683.CCFF01000014_gene3915	TIGRFAM Phage	NA
UHGV-0092173_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0092173_9	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0092173_9	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0092173_9	COG	COG5410	NA	NA
UHGV-0092173_9	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0092173_10	KOfam	K09961	NA	NA
UHGV-0092173_10	PHROG	phrog_146	portal protein	head and packaging
UHGV-0092173_10	UniRef90	UniRef90_UPI000F0C75D1	NA	NA
UHGV-0092173_10	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-0092173_10	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0092173_10	COG	COG3567	NA	NA
UHGV-0092173_11	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0092173_11	UniRef90	UniRef90_A0A1Y4CYL3	Phage_Mu_F domain-containing protein	NA
UHGV-0092173_11	eggNOG-mapper	762966.HMPREF9439_01033	Phage Mu protein F like protein	NA
UHGV-0092173_11	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0092173_11	COG	COG2369	NA	NA
UHGV-0092173_11	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0092173_12	KOfam	K09960	NA	NA
UHGV-0092173_12	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0092173_12	UniRef90	UniRef90_UPI000F0BF560	NA	NA
UHGV-0092173_12	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-0092173_12	Pfam	PF09979	NA	DUF2213
UHGV-0092173_12	COG	COG3566	NA	NA
UHGV-0092173_12	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0092173_13	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0092173_13	eggNOG-mapper	932213.SPM24T3_13785	NA	NA
UHGV-0092173_14	PHROG	phrog_264	major head protein	head and packaging
UHGV-0092173_14	UniRef90	UniRef90_UPI000F0C52E9	NA	NA
UHGV-0092173_14	eggNOG-mapper	1408428.JNJP01000012_gene1117	Protein conserved in bacteria	NA
UHGV-0092173_14	Pfam	PF09950	NA	DUF2184
UHGV-0092173_14	COG	COG4834	NA	NA
UHGV-0092173_14	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0092173_15	PHROG	phrog_2085	NA	unknown function
UHGV-0092173_16	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0092173_16	UniRef90	UniRef90_UPI000F0C6BF7	NA	NA
UHGV-0092173_16	eggNOG-mapper	932213.SPM24T3_13770	NA	NA
UHGV-0092173_16	Pfam	PF13262	NA	DUF4054
UHGV-0092173_16	Structural annotation	PF13262	NA	NA
UHGV-0092173_17	PHROG	phrog_222	tail protein	tail
UHGV-0092173_17	UniRef90	UniRef90_Q2L2W0	NA	NA
UHGV-0092173_17	eggNOG-mapper	477184.KYC_12728	NA	NA
UHGV-0092173_18	PHROG	phrog_1912	head protein	head and packaging
UHGV-0092173_18	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0092173_19	PHROG	phrog_1876	NA	unknown function
UHGV-0092173_19	eggNOG-mapper	762966.HMPREF9439_01041	NA	NA
UHGV-0092173_19	Structural annotation	PF16807	NA	NA
UHGV-0092173_20	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0092173_20	UniRef90	UniRef90_UPI000F0CB9E6	NA	NA
UHGV-0092173_20	eggNOG-mapper	762376.AXYL_04638	NA	NA
UHGV-0092173_20	Pfam	PF11863	NA	DUF3383
UHGV-0092173_20	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0092173_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0092173_21	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0092173_21	UniRef90	UniRef90_UPI000F0CBDE6	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0092173_21	eggNOG-mapper	1262915.BN574_01137	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0092173_21	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0092173_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0092173_21	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0092173_22	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0092173_22	UniRef90	UniRef90_UPI000F0C4D68	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0092173_22	eggNOG-mapper	1262915.BN574_01136	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0092173_22	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0092173_22	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0092173_23	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-0092173_23	eggNOG-mapper	469610.HMPREF0189_01198	NA	NA
UHGV-0092173_23	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-0092173_24	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-0092173_24	eggNOG-mapper	1408428.JNJP01000012_gene1128	NA	NA
UHGV-0092173_24	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0092173_24	Structural annotation	PF21822	NA	NA
UHGV-0092173_25	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0092173_25	UniRef90	UniRef90_A0A068CCM7	Lysozyme like domain protein	NA
UHGV-0092173_25	eggNOG-mapper	1187128.I2GUF1_9CAUD	NA	NA
UHGV-0092173_25	Structural annotation	TIGR01760	NA	NA
UHGV-0092173_26	PHROG	phrog_1830	NA	unknown function
UHGV-0092173_26	eggNOG-mapper	1097668.BYI23_B010580	NA	NA
UHGV-0092173_26	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0092173_26	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0092173_27	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0092173_27	eggNOG-mapper	742823.HMPREF9465_00930	NA	NA
UHGV-0092173_28	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0092173_28	UniRef90	UniRef90_F3QJE9	Conserved domain protein	NA
UHGV-0092173_28	eggNOG-mapper	469610.HMPREF0189_01203	NA	NA
UHGV-0092173_28	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0092173_29	UniRef90	UniRef90_UPI000F76D701	baseplate assembly protein	NA
UHGV-0092173_29	eggNOG-mapper	634452.APA01_05380	Baseplate assembly protein	NA
UHGV-0092173_29	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0092173_29	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0092173_29	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0092173_30	Structural annotation	PF13620, TIGR02465, COG3485	NA	NA
UHGV-0092173_32	PHROG	phrog_2143	NA	unknown function
UHGV-0092173_32	eggNOG-mapper	1087482.M1EAG1_9CAUD	NA	NA
UHGV-0092173_33	PHROG	phrog_120	baseplate protein	tail
UHGV-0092173_33	UniRef90	UniRef90_F3QJF1	Conserved domain protein	NA
UHGV-0092173_33	eggNOG-mapper	762966.HMPREF9439_01052	NA	NA
UHGV-0092173_34	PHROG	phrog_6	baseplate protein	tail
UHGV-0092173_34	UniRef90	UniRef90_UPI000F0C4906	baseplate J/gp47 family protein	NA
UHGV-0092173_34	eggNOG-mapper	1408428.JNJP01000012_gene1137	of phage Mu protein gp47	NA
UHGV-0092173_34	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0092173_34	COG	COG3299	NA	NA
UHGV-0092173_34	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0092173_35	PHROG	phrog_587	structural protein	head and packaging
UHGV-0092173_35	UniRef90	UniRef90_UPI000F0C82A7	NA	NA
UHGV-0092173_35	eggNOG-mapper	1408428.JNJP01000012_gene1138	NA	NA
UHGV-0092173_35	Pfam	PF11041	NA	DUF2612
UHGV-0092173_35	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0092173_36	PHROG	phrog_12796	tail fiber protein	tail
UHGV-0092173_36	eggNOG-mapper	1205683.CAKR01000013_gene1170	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0092173_36	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0092173_36	Structural annotation	PF15417, NF033208, COG1843	NA	NA
UHGV-0092173_37	PHROG	phrog_1833	tail fiber protein	tail
UHGV-0092173_37	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0092173_37	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0092173_37	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0092173_38	Structural annotation	PF14301	NA	NA
UHGV-0092173_39	PHROG	phrog_4105	NA	unknown function
UHGV-0092173_39	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0092173_40	Structural annotation	PF10841	NA	NA
UHGV-0092173_41	PHROG	phrog_5867	endolysin	lysis
UHGV-0092173_41	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092173_41	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092173_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0092173_41	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0092173_41	Structural annotation	MF_04111	NA	NA
UHGV-0092173_42	PHROG	phrog_1281	NA	unknown function
UHGV-0092173_42	UniRef90	UniRef90_I8TQN0	NA	NA
UHGV-0092173_42	eggNOG-mapper	1203606.HMPREF1526_00348	NA	NA
UHGV-0092173_42	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0092173_42	COG	COG3600	NA	NA
UHGV-0092173_42	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0092173_43	PHROG	phrog_5763	NA	unknown function
UHGV-0092173_43	eggNOG-mapper	1203606.HMPREF1526_00347	NA	NA