UHGV-0092186

Genome information

Genome length 30,987 bps

CDS count 58

Completeness 70.86% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092186
vOTU ID	vOTU-036609
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170438
BioSample	SAMEA3136719
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.65
Jumbo phage	No

Genome content
Genome length	30,987 bps
GC content	34.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.95%
Average CDS length	493.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092186_1	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0092186_1	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0092186_1	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0092186_2	PHROG	phrog_365	tail protein	tail
UHGV-0092186_2	UniRef90	UniRef90_UPI000C84C279	phage tail tube protein	NA
UHGV-0092186_2	eggNOG-mapper	357809.Cphy_2957	Phage tail tube protein	NA
UHGV-0092186_2	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0092186_2	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0092186_3	PHROG	phrog_279	tail sheath	tail
UHGV-0092186_3	UniRef90	UniRef90_A0A415TAL3	Phage tail protein	NA
UHGV-0092186_3	eggNOG-mapper	1029718.SFBM_0128	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0092186_3	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0092186_3	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0092186_3	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0092186_3	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0092186_4	PHROG	phrog_966	NA	unknown function
UHGV-0092186_4	eggNOG-mapper	357809.Cphy_2959	NA	NA
UHGV-0092186_5	PHROG	phrog_525	NA	unknown function
UHGV-0092186_5	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-0092186_5	eggNOG-mapper	357809.Cphy_2960	NA	NA
UHGV-0092186_5	Pfam	PF20765	NA	DUF6838
UHGV-0092186_5	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0092186_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0092186_6	UniRef90	UniRef90_A0A415TAD4	HK97 gp10 family phage protein	NA
UHGV-0092186_6	eggNOG-mapper	357809.Cphy_2961	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0092186_6	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0092186_6	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0092186_7	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0092186_7	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-0092186_7	eggNOG-mapper	1029718.SFBM_0124	NA	NA
UHGV-0092186_7	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0092186_8	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0092186_8	eggNOG-mapper	1095750.HMPREF9970_0285	NA	NA
UHGV-0092186_8	Structural annotation	PF05135	NA	NA
UHGV-0092186_9	PHROG	phrog_247	major head protein	head and packaging
UHGV-0092186_9	UniRef90	UniRef90_A0A415TAB6	Phage coat protein	NA
UHGV-0092186_9	eggNOG-mapper	1029718.SFBM_0122	NA	NA
UHGV-0092186_9	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0092186_9	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0092186_9	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0092186_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0092186_10	UniRef90	UniRef90_UPI000DE48932	phage scaffolding protein	NA
UHGV-0092186_10	eggNOG-mapper	1095750.HMPREF9970_1035	Phage minor structural protein GP20	NA
UHGV-0092186_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0092186_10	Structural annotation	PF06810	NA	NA
UHGV-0092186_11	Structural annotation	PF20124	NA	NA
UHGV-0092186_13	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0092186_13	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0092186_13	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0092186_13	Pfam	PF14359	NA	DUF4406
UHGV-0092186_13	Structural annotation	PF14359	NA	NA
UHGV-0092186_15	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0092186_15	UniRef90	UniRef90_UPI001D05E658	minor capsid protein	NA
UHGV-0092186_15	eggNOG-mapper	1029718.SFBM_0117	Phage Mu protein F like protein	NA
UHGV-0092186_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0092186_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0092186_15	COG	COG2369	NA	NA
UHGV-0092186_15	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0092186_16	PHROG	phrog_64	portal protein	head and packaging
UHGV-0092186_16	UniRef90	UniRef90_UPI001D05D7B4	phage portal protein	NA
UHGV-0092186_16	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-0092186_16	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0092186_16	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0092186_17	PHROG	phrog_1233	NA	unknown function
UHGV-0092186_17	UniRef90	UniRef90_UPI001D077F84	basic secretory family protein	NA
UHGV-0092186_17	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0092186_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092186_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0092186_18	UniRef90	UniRef90_A0A415TAM3	PBSX family phage terminase large subunit	NA
UHGV-0092186_18	eggNOG-mapper	608534.GCWU000341_02297	Phage terminase, large subunit, PBSX family	NA
UHGV-0092186_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0092186_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0092186_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0092186_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092186_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0092186_19	PHROG	phrog_2412	NA	unknown function
UHGV-0092186_19	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0092186_19	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0092186_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0092186_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0092186_21	UniRef90	UniRef90_A0A3D1VLS0	Flagellar biosynthesis protein FliA	NA
UHGV-0092186_21	eggNOG-mapper	693746.OBV_41690	NA	NA
UHGV-0092186_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0092186_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0092186_21	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0092186_22	UniRef90	UniRef90_U7UKH4	YjcQ protein	NA
UHGV-0092186_22	eggNOG-mapper	1111134.HMPREF1253_1941	YjcQ protein	NA
UHGV-0092186_23	Structural annotation	PF11344	NA	NA
UHGV-0092186_24	eggNOG-mapper	33035.JPJF01000030_gene2290	Phage minor capsid protein 2	NA
UHGV-0092186_24	COG	COG2369	NA	NA
UHGV-0092186_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092186_25	UniRef90	UniRef90_A0A847W532	HNH endonuclease	NA
UHGV-0092186_25	eggNOG-mapper	482234.SCAZ3_03680	HNH endonuclease	NA
UHGV-0092186_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0092186_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0092186_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0092186_26	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0092186_27	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0092186_27	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0092186_27	UniRef90	UniRef90_UPI00164B5A92	N-6 DNA methylase	NA
UHGV-0092186_27	eggNOG-mapper	1095750.HMPREF9970_0172	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0092186_27	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0092186_27	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0092186_27	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0092186_27	Structural annotation	PF02384, TIGR00497, COG0286	NA	NA
UHGV-0092186_28	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0092186_28	UniRef90	UniRef90_I0RBA9	N-6 DNA Methylase domain protein	NA
UHGV-0092186_28	eggNOG-mapper	1095750.HMPREF9970_0171	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0092186_28	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0092186_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0092186_28	Structural annotation	PF02475, MF_02217, NF000058, COG2263	NA	NA
UHGV-0092186_29	PHROG	phrog_6721	NA	unknown function
UHGV-0092186_29	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0092186_29	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0092186_30	PHROG	phrog_7566	NA	unknown function
UHGV-0092186_31	PHROG	phrog_9804	NA	unknown function
UHGV-0092186_31	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0092186_31	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0092186_31	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0092186_31	Structural annotation	PF11417	NA	NA
UHGV-0092186_32	PHROG	phrog_236	nucleotide kinase	other
UHGV-0092186_32	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0092186_32	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0092186_32	Pfam	PF11753	NA	DUF3310
UHGV-0092186_33	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0092186_33	UniRef90	UniRef90_U3PDU2	Putative DNA replication protein	NA
UHGV-0092186_33	eggNOG-mapper	1399942.U3PDU2_9CAUD	calcium ion binding	NA
UHGV-0092186_33	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-0092186_34	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0092186_34	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0092186_34	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0092186_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0092186_34	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0092186_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0092186_35	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0092186_35	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0092186_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0092186_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092186_36	UniRef90	UniRef90_A0A1T4VR86	Single-stranded DNA-binding protein	NA
UHGV-0092186_36	eggNOG-mapper	1280694.AUJQ01000009_gene318	Single-strand binding protein family	NA
UHGV-0092186_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0092186_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0092186_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0092186_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0092186_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0092186_37	PHROG	phrog_7024	NA	unknown function
UHGV-0092186_38	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092186_38	UniRef90	UniRef90_A0A3D5XTJ3	Cas_Cas4 domain-containing protein	NA
UHGV-0092186_38	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0092186_38	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0092186_39	PHROG	phrog_6244	NA	unknown function
UHGV-0092186_39	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0092186_39	Structural annotation	PF05565	NA	NA
UHGV-0092186_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0092186_41	UniRef90	UniRef90_UPI001B0DFF6D	ERF family protein	NA
UHGV-0092186_41	eggNOG-mapper	1139219.I569_01405	ERF superfamily	NA
UHGV-0092186_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-0092186_41	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0092186_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0092186_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0092186_45	UniRef90	UniRef90_UPI000C81B5C4	phage antirepressor	NA
UHGV-0092186_45	eggNOG-mapper	883077.HMPREF9241_01671	BRO family, N-terminal domain	NA
UHGV-0092186_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0092186_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0092186_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0092186_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0092186_46	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0092186_46	Pfam	PF05534	HicB family	HicB
UHGV-0092186_47	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0092186_48	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0092186_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0092186_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0092186_49	UniRef90	UniRef90_UPI00085BF623	phage antirepressor KilAC domain-containing protein	NA
UHGV-0092186_49	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0092186_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0092186_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0092186_49	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0092186_50	UniRef90	UniRef90_A0A373ILH4	NA	NA
UHGV-0092186_50	eggNOG-mapper	526218.Sterm_3925	NA	NA
UHGV-0092186_50	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0092186_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0092186_51	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0092186_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0092186_51	UniRef90	UniRef90_C6LG10	Putative repressor LexA	NA
UHGV-0092186_51	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0092186_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092186_51	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0092186_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0092186_51	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0092186_53	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0092186_53	UniRef90	UniRef90_A0A1H2TVE1	Abi-like protein	NA
UHGV-0092186_53	eggNOG-mapper	1280673.AUJJ01000010_gene2559	Abi-like protein	NA
UHGV-0092186_53	PADLOC	AbiD	AbiD	Abi
UHGV-0092186_53	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0092186_53	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0092186_53	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0092186_57	KOfam	K14059	int; integrase	NA
UHGV-0092186_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0092186_57	UniRef90	UniRef90_A0A143XPJ0	Tyrosine recombinase XerD	NA
UHGV-0092186_57	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0092186_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092186_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0092186_57	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0092186_58	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0092186_58	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0092186_58	UniRef90	UniRef90_A0A1I5D665	RNA polymerase sigma factor SigS	NA
UHGV-0092186_58	eggNOG-mapper	1449050.JNLE01000005_gene4854	Belongs to the sigma-70 factor family	NA
UHGV-0092186_58	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0092186_58	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0092186_58	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0092186_58	Structural annotation	PF07638, MF_00961, NF006148, COG1191	NA	NA