UHGV-0092216

Genome information

Genome length 40,934 bps

CDS count 61

Completeness 93.97% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092216
vOTU ID	vOTU-013063
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177982
BioSample	SAMEA3449311
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.82
Jumbo phage	No

Genome content
Genome length	40,934 bps
GC content	54.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.43%
Average CDS length	603.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092216_1	eggNOG-mapper	1235797.C816_00408	NA	NA
UHGV-0092216_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0092216_2	PHROG	phrog_435	endolysin	lysis
UHGV-0092216_2	UniRef90	UniRef90_UPI001BF1661D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092216_2	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0092216_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0092216_2	Pfam	PF05036	SPOR domain	SPOR
UHGV-0092216_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092216_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0092216_3	PHROG	phrog_199	holin	lysis
UHGV-0092216_3	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0092216_3	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0092216_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0092216_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0092216_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0092216_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0092216_5	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0092216_5	eggNOG-mapper	1410631.JHWZ01000005_gene204	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0092216_5	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0092216_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0092216_6	Structural annotation	PF10651, COG3330	NA	NA
UHGV-0092216_7	PHROG	phrog_372	tail protein	tail
UHGV-0092216_7	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0092216_7	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0092216_7	Pfam	PF05895	NA	DUF859
UHGV-0092216_7	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0092216_8	PHROG	phrog_6616	tail protein	tail
UHGV-0092216_8	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0092216_8	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0092216_9	PHROG	phrog_1194	NA	unknown function
UHGV-0092216_9	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0092216_9	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0092216_9	Pfam	PF20458	NA	DUF6711
UHGV-0092216_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0092216_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0092216_10	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0092216_10	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0092216_11	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0092216_12	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0092216_12	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0092216_12	Pfam	PF16478	NA	DUF5055
UHGV-0092216_12	Structural annotation	PF16478	NA	NA
UHGV-0092216_13	PHROG	phrog_158	major tail protein	tail
UHGV-0092216_13	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0092216_13	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0092216_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0092216_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0092216_14	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0092216_15	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0092216_16	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0092216_17	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0092216_17	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0092216_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0092216_17	Structural annotation	TIGR01560	NA	NA
UHGV-0092216_18	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0092216_18	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0092216_18	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0092216_18	Pfam	PF17236	NA	DUF5309
UHGV-0092216_18	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0092216_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0092216_20	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0092216_20	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0092216_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0092216_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0092216_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0092216_21	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0092216_21	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0092216_21	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0092216_21	COG	COG5410	NA	NA
UHGV-0092216_21	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0092216_23	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0092216_23	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0092216_23	UniRef90	UniRef90_R6Y8B4	Resolvase N-terminal domain protein	NA
UHGV-0092216_23	eggNOG-mapper	411467.BACCAP_02922	Resolvase, N terminal domain	NA
UHGV-0092216_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0092216_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0092216_23	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0092216_25	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092216_25	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0092216_27	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0092216_27	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0092216_27	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0092216_27	Structural annotation	PF16677	NA	NA
UHGV-0092216_28	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0092216_28	Structural annotation	TIGR01636	NA	NA
UHGV-0092216_32	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0092216_32	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0092216_32	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0092216_32	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0092216_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0092216_36	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0092216_36	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0092216_36	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0092216_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0092216_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0092216_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0092216_37	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0092216_37	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-0092216_37	eggNOG-mapper	742735.HMPREF9467_02778	C-5 cytosine-specific DNA methylase	NA
UHGV-0092216_37	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0092216_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0092216_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0092216_37	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0092216_38	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0092216_38	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0092216_38	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0092216_38	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0092216_38	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0092216_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0092216_38	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0092216_38	Structural annotation	PF01555, PF13871, MF_01872, NF008572, COG0863	NA	NA
UHGV-0092216_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0092216_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0092216_39	UniRef90	UniRef90_A0A6B9SRR2	Endodeoxyribonuclease	NA
UHGV-0092216_39	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0092216_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0092216_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0092216_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0092216_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0092216_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0092216_40	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0092216_40	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-0092216_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0092216_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0092216_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0092216_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0092216_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0092216_41	UniRef90	UniRef90_UPI000F093508	phage replication protein	NA
UHGV-0092216_41	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0092216_41	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0092216_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0092216_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092216_42	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0092216_42	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0092216_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0092216_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0092216_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0092216_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0092216_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0092216_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0092216_43	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0092216_44	PHROG	phrog_7566	NA	unknown function
UHGV-0092216_44	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0092216_44	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0092216_45	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092216_45	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0092216_45	Structural annotation	PF17375	NA	NA
UHGV-0092216_46	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0092216_46	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0092216_46	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0092216_46	Structural annotation	PF05772	NA	NA
UHGV-0092216_47	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092216_47	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0092216_47	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-0092216_47	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0092216_47	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0092216_48	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0092216_48	eggNOG-mapper	445972.ANACOL_01823	NA	NA
UHGV-0092216_48	Pfam	PF06378	NA	DUF1071
UHGV-0092216_48	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0092216_53	PHROG	phrog_4433	NA	unknown function
UHGV-0092216_53	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0092216_53	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0092216_54	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0092216_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0092216_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0092216_56	UniRef90	UniRef90_A0A096BAN9	HTH cro/C1-type domain-containing protein	NA
UHGV-0092216_56	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-0092216_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092216_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0092216_56	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0092216_57	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092216_57	UniRef90	UniRef90_UPI0018984E24	NA	NA
UHGV-0092216_57	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0092216_57	Structural annotation	COG2250	NA	NA
UHGV-0092216_58	UniRef90	UniRef90_A0A3B8S8C0	Carboxypeptidase	NA
UHGV-0092216_58	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0092216_59	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0092216_59	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0092216_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092216_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0092216_59	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0092216_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092216_60	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0092216_61	KOfam	K14059	int; integrase	NA
UHGV-0092216_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0092216_61	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0092216_61	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0092216_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092216_61	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0092216_61	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA