UHGV-0092304

Genome information

Genome length 44,454 bps

CDS count 68

Completeness 98.69% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092304
vOTU ID	vOTU-059495
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194583
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.04
Jumbo phage	No

Genome content
Genome length	44,454 bps
GC content	42.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.28%
Average CDS length	601.41 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092304_1	KOfam	K14059	int; integrase	NA
UHGV-0092304_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0092304_1	UniRef90	UniRef90_D4LPN8	Phage integrase family	NA
UHGV-0092304_1	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0092304_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092304_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0092304_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0092304_2	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0092304_2	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0092304_2	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0092304_2	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0092304_2	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0092304_3	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0092304_3	PHROG	phrog_8810	NA	unknown function
UHGV-0092304_3	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0092304_3	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0092304_3	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0092304_3	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0092304_3	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0092304_3	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0092304_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0092304_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0092304_5	UniRef90	UniRef90_R5GZQ0	Helix-turn-helix protein	NA
UHGV-0092304_5	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0092304_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0092304_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0092304_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092304_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0092304_8	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0092304_10	PHROG	phrog_6058	NA	unknown function
UHGV-0092304_10	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0092304_10	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0092304_11	AcrCatalog	cluster_17974	NA	NA
UHGV-0092304_14	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0092304_14	UniRef90	UniRef90_A0A352BM23	NA	NA
UHGV-0092304_14	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0092304_14	Pfam	PF06378	NA	DUF1071
UHGV-0092304_14	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0092304_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0092304_15	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0092304_16	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0092304_16	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0092304_16	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0092304_17	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0092304_17	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0092304_17	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0092304_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0092304_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0092304_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0092304_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0092304_18	UniRef90	UniRef90_A0A352BM19	IstB_IS21 domain-containing protein	NA
UHGV-0092304_18	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0092304_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0092304_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0092304_18	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0092304_20	PHROG	phrog_7566	NA	unknown function
UHGV-0092304_20	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0092304_21	PHROG	phrog_3502	NA	unknown function
UHGV-0092304_21	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0092304_21	eggNOG-mapper	525256.HMPREF0091_10731	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0092304_21	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0092304_21	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0092304_21	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-0092304_22	Structural annotation	PF04936	NA	NA
UHGV-0092304_26	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0092304_26	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0092304_27	PHROG	phrog_15198	NA	unknown function
UHGV-0092304_27	UniRef90	UniRef90_A0A317UCE7	NA	NA
UHGV-0092304_27	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0092304_27	Pfam	PF04448	NA	DUF551
UHGV-0092304_28	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0092304_28	UniRef90	UniRef90_UPI00156DBFFE	radical SAM protein	NA
UHGV-0092304_28	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0092304_28	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0092304_28	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0092304_29	AcrCatalog	cluster_11670	NA	NA
UHGV-0092304_31	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-0092304_31	Structural annotation	TIGR04116	NA	NA
UHGV-0092304_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0092304_32	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0092304_32	UniRef90	UniRef90_A0A0Q8YU11	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0092304_32	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0092304_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0092304_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0092304_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0092304_32	COG	COG0863	DNA modification methylase	NA
UHGV-0092304_32	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-0092304_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092304_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0092304_33	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0092304_33	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0092304_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0092304_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0092304_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0092304_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092304_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0092304_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0092304_35	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0092304_35	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0092304_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0092304_36	PHROG	phrog_11541	NA	unknown function
UHGV-0092304_36	UniRef90	UniRef90_UPI0018C7F188	SGNH/GDSL hydrolase family protein	NA
UHGV-0092304_36	eggNOG-mapper	761193.Runsl_1251	NA	NA
UHGV-0092304_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0092304_37	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0092304_37	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0092304_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0092304_37	COG	COG2369	NA	NA
UHGV-0092304_37	Structural annotation	PF06152	NA	NA
UHGV-0092304_38	PHROG	phrog_3754	NA	unknown function
UHGV-0092304_38	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0092304_39	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0092304_39	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0092304_40	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0092304_40	PHROG	phrog_2104	NA	unknown function
UHGV-0092304_40	UniRef90	UniRef90_A0A1C5PJW7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0092304_40	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-0092304_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092304_40	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0092304_40	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0092304_43	PHROG	phrog_21718	NA	unknown function
UHGV-0092304_43	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0092304_44	PHROG	phrog_22984	NA	unknown function
UHGV-0092304_45	PHROG	phrog_16490	NA	unknown function
UHGV-0092304_45	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0092304_46	PHROG	phrog_20016	NA	unknown function
UHGV-0092304_46	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0092304_46	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0092304_46	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0092304_47	PHROG	phrog_28802	NA	unknown function
UHGV-0092304_47	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0092304_49	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0092304_49	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0092304_49	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0092304_49	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0092304_50	PHROG	phrog_544	major head protein	head and packaging
UHGV-0092304_50	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0092304_50	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0092304_50	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0092304_50	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0092304_51	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0092304_51	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0092304_53	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0092304_53	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0092304_53	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0092304_53	Structural annotation	PF14359	NA	NA
UHGV-0092304_54	PHROG	phrog_18218	NA	unknown function
UHGV-0092304_54	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0092304_54	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0092304_54	Structural annotation	PF06946	NA	NA
UHGV-0092304_55	PHROG	phrog_3366	NA	unknown function
UHGV-0092304_55	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0092304_55	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0092304_56	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0092304_56	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0092304_56	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0092304_56	Structural annotation	PF11114	NA	NA
UHGV-0092304_57	PHROG	phrog_3266	tail completion	connector
UHGV-0092304_57	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0092304_57	Structural annotation	PF12691	NA	NA
UHGV-0092304_58	PHROG	phrog_3099	NA	unknown function
UHGV-0092304_58	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0092304_58	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0092304_59	PHROG	phrog_11299	NA	unknown function
UHGV-0092304_59	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0092304_59	Structural annotation	PF10666	NA	NA
UHGV-0092304_60	PHROG	phrog_706	NA	unknown function
UHGV-0092304_60	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0092304_60	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0092304_60	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0092304_60	Structural annotation	PF06854	NA	NA
UHGV-0092304_61	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0092304_61	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0092304_61	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0092304_61	COG	COG1511	NA	NA
UHGV-0092304_61	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0092304_62	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0092304_63	PHROG	phrog_6616	tail protein	tail
UHGV-0092304_63	UniRef90	UniRef90_UPI001D0E203F	tail fiber domain-containing protein	NA
UHGV-0092304_63	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0092304_63	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0092304_63	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0092304_63	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0092304_64	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0092304_65	KOfam	K07273	acm; lysozyme	NA
UHGV-0092304_65	PHROG	phrog_6745	endolysin	lysis
UHGV-0092304_65	UniRef90	UniRef90_A0A417PG91	CHAP domain-containing protein	NA
UHGV-0092304_65	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0092304_65	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0092304_65	Pfam	PF05257	CHAP domain	CHAP
UHGV-0092304_65	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0092304_65	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0092304_66	UniRef90	UniRef90_E9RTH1	HTH luxR-type domain-containing protein	NA
UHGV-0092304_66	eggNOG-mapper	500632.CLONEX_02025	NA	NA
UHGV-0092304_66	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0092304_67	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0092304_67	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0092304_67	Structural annotation	PF08965, NF040522, COG2944	NA	NA