UHGV-0092357

Genome information

Genome length 32,896 bps

CDS count 52

Completeness 91.97% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092357
vOTU ID	vOTU-071580
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187488
BioSample	SAMEA3449323
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.39
Jumbo phage	No

Genome content
Genome length	32,896 bps
GC content	42.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.49%
Average CDS length	582.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092357_2	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0092357_6	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0092357_6	UniRef90	UniRef90_A0A564SBZ1	Siphovirus Gp157	NA
UHGV-0092357_6	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0092357_6	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0092357_6	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0092357_7	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0092357_8	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0092357_8	UniRef90	UniRef90_UPI001D06DB67	ATP-binding protein	NA
UHGV-0092357_8	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0092357_8	Pfam	PF13479	AAA domain	AAA_24
UHGV-0092357_8	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0092357_9	PHROG	phrog_18107	NA	unknown function
UHGV-0092357_9	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0092357_9	Structural annotation	PF05037	NA	NA
UHGV-0092357_10	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0092357_10	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-0092357_10	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0092357_10	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0092357_10	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0092357_11	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0092357_11	PHROG	phrog_11992	NA	unknown function
UHGV-0092357_11	UniRef90	UniRef90_A0A373STX8	DNA primase	NA
UHGV-0092357_11	eggNOG-mapper	1298920.KI911353_gene4867	CHC2 zinc finger	NA
UHGV-0092357_11	PADLOC	drt-UG29	DRT	DRT
UHGV-0092357_11	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0092357_11	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0092357_11	Structural annotation	PF01807	NA	NA
UHGV-0092357_12	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0092357_12	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0092357_12	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0092357_12	Pfam	PF06048	NA	DUF927
UHGV-0092357_12	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0092357_12	COG	COG5519	NA	NA
UHGV-0092357_12	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0092357_13	PHROG	phrog_23374	NA	unknown function
UHGV-0092357_14	eggNOG-mapper	658655.HMPREF0988_02579	NA	NA
UHGV-0092357_16	UniRef90	UniRef90_A0A373SW51	NA	NA
UHGV-0092357_16	Pfam	PF04448	NA	DUF551
UHGV-0092357_17	eggNOG-mapper	1449343.JQLQ01000002_gene1542	NA	NA
UHGV-0092357_19	PHROG	phrog_9822	NA	unknown function
UHGV-0092357_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0092357_21	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0092357_21	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0092357_21	Pfam	PF07374	NA	DUF1492
UHGV-0092357_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0092357_21	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0092357_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0092357_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092357_22	UniRef90	UniRef90_A0A1Q6K9L9	HNHc domain-containing protein	NA
UHGV-0092357_22	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0092357_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0092357_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0092357_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0092357_23	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0092357_23	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0092357_23	COG	COG5484	NA	NA
UHGV-0092357_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0092357_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0092357_24	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0092357_24	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0092357_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0092357_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0092357_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0092357_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0092357_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0092357_25	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0092357_25	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0092357_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0092357_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0092357_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0092357_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0092357_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0092357_26	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0092357_26	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0092357_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0092357_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0092357_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0092357_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0092357_27	UniRef90	UniRef90_A0A844KDK0	Phage major capsid protein	NA
UHGV-0092357_27	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0092357_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0092357_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0092357_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0092357_27	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0092357_29	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0092357_29	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0092357_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0092357_30	Structural annotation	PF05657	NA	NA
UHGV-0092357_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0092357_31	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0092357_31	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0092357_32	PHROG	phrog_88	major tail protein	tail
UHGV-0092357_32	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0092357_32	eggNOG-mapper	1033737.CAEV01000029_gene288	NA	NA
UHGV-0092357_32	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0092357_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0092357_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0092357_34	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0092357_34	UniRef90	UniRef90_A0A3B8XXQ5	PhageMin_Tail domain-containing protein (Fragment)	NA
UHGV-0092357_34	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0092357_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0092357_34	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0092357_35	PHROG	phrog_17020	NA	unknown function
UHGV-0092357_35	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0092357_35	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0092357_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0092357_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0092357_36	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0092357_36	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0092357_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0092357_36	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0092357_37	PHROG	phrog_13289	tail protein	tail
UHGV-0092357_37	UniRef90	UniRef90_A0A844KBR1	Prophage_tail domain-containing protein	NA
UHGV-0092357_37	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0092357_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0092357_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0092357_37	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0092357_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0092357_38	PHROG	phrog_14030	NA	unknown function
UHGV-0092357_38	UniRef90	UniRef90_A0A844KDJ1	Peptidase M23	NA
UHGV-0092357_38	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0092357_38	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0092357_38	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0092357_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0092357_38	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0092357_39	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0092357_39	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0092357_39	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0092357_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0092357_39	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0092357_40	PHROG	phrog_16164	NA	unknown function
UHGV-0092357_40	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0092357_40	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0092357_41	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0092357_41	PHROG	phrog_819	tail protein	tail
UHGV-0092357_41	UniRef90	UniRef90_UPI0006C6DE05	collagen-like protein	NA
UHGV-0092357_41	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0092357_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0092357_42	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0092357_42	PHROG	phrog_819	tail protein	tail
UHGV-0092357_42	UniRef90	UniRef90_UPI001A9A6571	collagen-like protein	NA
UHGV-0092357_42	eggNOG-mapper	877414.ATWA01000019_gene2051	NA	NA
UHGV-0092357_42	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0092357_42	Structural annotation	PF05737	NA	NA
UHGV-0092357_44	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0092357_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0092357_44	UniRef90	UniRef90_A0A844KCF3	Tyrosine-type recombinase/integrase	NA
UHGV-0092357_44	eggNOG-mapper	742765.HMPREF9457_03372	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0092357_44	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0092357_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092357_44	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0092357_44	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0092357_45	eggNOG-mapper	553973.CLOHYLEM_06551	to Mitochondrial intermediate peptidase K01410	NA
UHGV-0092357_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0092357_45	Structural annotation	NF012201	NA	NA
UHGV-0092357_46	UniRef90	UniRef90_A0A373CM53	Acyl carrier protein	NA
UHGV-0092357_46	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0092357_46	Structural annotation	PF14301	NA	NA
UHGV-0092357_47	PHROG	phrog_20274	NA	unknown function
UHGV-0092357_47	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-0092357_47	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0092357_47	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0092357_47	COG	COG4905	NA	NA
UHGV-0092357_47	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0092357_48	PHROG	phrog_1863	NA	unknown function
UHGV-0092357_48	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0092357_49	PHROG	phrog_18218	NA	unknown function
UHGV-0092357_49	UniRef90	UniRef90_A0A373SUI3	Ribonuclease	NA
UHGV-0092357_49	eggNOG-mapper	658655.HMPREF0988_02546	NA	NA
UHGV-0092357_49	Structural annotation	PF06946	NA	NA
UHGV-0092357_50	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0092357_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0092357_51	PHROG	phrog_291	endolysin	lysis
UHGV-0092357_51	UniRef90	UniRef90_A0A564SYY2	Glycosyl hydrolases family 25	NA
UHGV-0092357_51	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0092357_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0092357_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0092357_51	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0092357_52	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0092357_52	PHROG	phrog_7573	NA	unknown function
UHGV-0092357_52	UniRef90	UniRef90_A0A174ZD98	Probable manganese catalase	NA
UHGV-0092357_52	eggNOG-mapper	411460.RUMTOR_00841	NA	NA
UHGV-0092357_52	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0092357_52	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA