UHGV-0092435

Genome information

Genome length 25,150 bps

CDS count 41

Completeness 63.76% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092435
vOTU ID	vOTU-026139
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177792
BioSample	SAMEA3449283
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.68
Jumbo phage	No

Genome content
Genome length	25,150 bps
GC content	29.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	90.57%
Average CDS length	557.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092435_1	PHROG	phrog_17334	NA	unknown function
UHGV-0092435_1	UniRef90	UniRef90_UPI0010458139	inorganic polyphosphate kinase	NA
UHGV-0092435_1	eggNOG-mapper	1414720.CBYM010000002_gene558	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0092435_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0092435_3	PHROG	phrog_6616	tail protein	tail
UHGV-0092435_3	UniRef90	UniRef90_UPI0007AE71C3	gp58-like family protein	NA
UHGV-0092435_3	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0092435_3	COG	COG4926	Phage-related protein	NA
UHGV-0092435_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0092435_4	PHROG	phrog_1194	NA	unknown function
UHGV-0092435_4	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0092435_4	Pfam	PF20458	NA	DUF6711
UHGV-0092435_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0092435_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0092435_5	UniRef90	UniRef90_A0A1C6I104	Phage-related protein	NA
UHGV-0092435_5	eggNOG-mapper	1499683.CCFF01000014_gene3900	phage tail tape measure protein	NA
UHGV-0092435_5	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0092435_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0092435_6	PHROG	phrog_2066	NA	unknown function
UHGV-0092435_6	eggNOG-mapper	562981.HMPREF0428_01812	NA	NA
UHGV-0092435_7	PHROG	phrog_158	major tail protein	tail
UHGV-0092435_7	UniRef90	UniRef90_A0A1C6HZK6	Phage tail protein	NA
UHGV-0092435_7	eggNOG-mapper	1499683.CCFF01000014_gene3903	Phage tail tube protein, TTP	NA
UHGV-0092435_7	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0092435_7	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0092435_8	PHROG	phrog_78	tail terminator	connector
UHGV-0092435_8	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0092435_8	Structural annotation	PF05657	NA	NA
UHGV-0092435_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0092435_9	UniRef90	UniRef90_A0A1C6I123	Phage protein, HK97 gp10 family	NA
UHGV-0092435_9	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0092435_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0092435_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0092435_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0092435_10	PHROG	phrog_2168	NA	unknown function
UHGV-0092435_10	eggNOG-mapper	1280692.AUJL01000025_gene2077	NA	NA
UHGV-0092435_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0092435_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0092435_11	UniRef90	UniRef90_UPI0018AC39AE	phage head-tail connector protein	NA
UHGV-0092435_11	eggNOG-mapper	1294142.CINTURNW_1692	Phage gp6-like head-tail connector protein	NA
UHGV-0092435_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0092435_11	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0092435_12	PHROG	phrog_2724	NA	unknown function
UHGV-0092435_12	UniRef90	UniRef90_UPI0018A967B3	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0092435_12	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0092435_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0092435_13	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0092435_13	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-0092435_13	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0092435_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0092435_14	UniRef90	UniRef90_UPI0018AA404B	NA	NA
UHGV-0092435_14	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0092435_14	Pfam	PF14265	NA	DUF4355
UHGV-0092435_14	Structural annotation	PF14265	NA	NA
UHGV-0092435_16	PHROG	phrog_2546	NA	unknown function
UHGV-0092435_16	UniRef90	UniRef90_UPI0018AC6E52	TM2 domain-containing protein	NA
UHGV-0092435_16	eggNOG-mapper	1280689.AUJC01000003_gene973	NA	NA
UHGV-0092435_16	Pfam	PF05154	TM2 domain	TM2
UHGV-0092435_16	Structural annotation	PF05154, PF02701, COG3478, COG2314	NA	NA
UHGV-0092435_17	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0092435_17	UniRef90	UniRef90_A0A1C6HZ48	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0092435_17	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0092435_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0092435_17	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0092435_17	COG	COG2369	NA	NA
UHGV-0092435_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0092435_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0092435_18	UniRef90	UniRef90_UPI0018AA41B6	phage portal protein	NA
UHGV-0092435_18	eggNOG-mapper	1280692.AUJL01000025_gene2083	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0092435_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0092435_18	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0092435_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0092435_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092435_19	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0092435_19	UniRef90	UniRef90_A0A381IS45	Terminase large subunit	NA
UHGV-0092435_19	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0092435_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0092435_19	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0092435_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0092435_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092435_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0092435_20	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0092435_20	UniRef90	UniRef90_UPI0018AAA6FE	phage terminase small subunit	NA
UHGV-0092435_20	eggNOG-mapper	1294142.CINTURNW_1681	DNA packaging	NA
UHGV-0092435_20	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0092435_20	COG	COG5484	NA	NA
UHGV-0092435_20	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0092435_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0092435_21	PHROG	phrog_216	integrase	integration and excision
UHGV-0092435_21	UniRef90	UniRef90_A0A1C6GWQ2	Site-specific tyrosine recombinase XerC	NA
UHGV-0092435_21	eggNOG-mapper	1291050.JAGE01000001_gene2915	PFAM Phage integrase family	NA
UHGV-0092435_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092435_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0092435_21	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0092435_22	PHROG	phrog_9628	NA	unknown function
UHGV-0092435_22	UniRef90	UniRef90_UPI001C8CCE1F	DNA-binding response regulator	NA
UHGV-0092435_22	eggNOG-mapper	536233.CLO_1415	NA	NA
UHGV-0092435_22	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0092435_23	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-0092435_23	UniRef90	UniRef90_A0A8I0DNB1	NA	NA
UHGV-0092435_23	eggNOG-mapper	1414720.CBYM010000001_gene689	NA	NA
UHGV-0092435_23	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-0092435_23	NCBIFam	NF003315.0	hypothetical protein	NA
UHGV-0092435_23	COG	COG2052	NA	NA
UHGV-0092435_23	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-0092435_25	PHROG	phrog_3356	transposase	integration and excision
UHGV-0092435_25	UniRef90	UniRef90_I2E8Y4	Gp39	NA
UHGV-0092435_25	eggNOG-mapper	997296.PB1_16379	NA	NA
UHGV-0092435_26	UniRef90	UniRef90_A0A1C6DKR2	NA	NA
UHGV-0092435_27	PHROG	phrog_1672	NA	unknown function
UHGV-0092435_27	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-0092435_27	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0092435_28	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092435_28	UniRef90	UniRef90_UPI0018AAA64C	NA	NA
UHGV-0092435_28	eggNOG-mapper	1211817.CCAT010000049_gene2477	NA	NA
UHGV-0092435_28	Pfam	PF12961	NA	DUF3850
UHGV-0092435_28	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0092435_30	eggNOG-mapper	1414720.CBYM010000040_gene1633	NA	NA
UHGV-0092435_31	PHROG	phrog_1065	NA	unknown function
UHGV-0092435_31	UniRef90	UniRef90_A0A161XG28	HTH DNA binding domain protein	NA
UHGV-0092435_31	eggNOG-mapper	1295642.H839_08179	NA	NA
UHGV-0092435_31	Pfam	PF04967	HTH DNA binding domain	HTH_10
UHGV-0092435_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0092435_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092435_32	UniRef90	UniRef90_A0A1C6K8T2	Single-stranded DNA-binding protein	NA
UHGV-0092435_32	eggNOG-mapper	1414720.CBYM010000001_gene680	Single-stranded DNA-binding protein	NA
UHGV-0092435_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0092435_32	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0092435_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0092435_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0092435_32	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0092435_35	PHROG	phrog_98	NA	unknown function
UHGV-0092435_35	UniRef90	UniRef90_UPI0018A9284C	YopX family protein	NA
UHGV-0092435_35	eggNOG-mapper	1414720.CBYM010000002_gene585	YopX protein	NA
UHGV-0092435_35	Pfam	PF09643	YopX protein	YopX
UHGV-0092435_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0092435_36	PHROG	phrog_10086	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092435_36	UniRef90	UniRef90_A0A1C6K8P7	TrmB domain-containing protein	NA
UHGV-0092435_36	Pfam	PF12802	MarR family	MarR_2
UHGV-0092435_36	Structural annotation	PF01978, MF_01911, NF033789, COG0640	NA	NA
UHGV-0092435_37	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0092435_37	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0092435_37	UniRef90	UniRef90_A0A1C6K9S5	Replicative DNA helicase	NA
UHGV-0092435_37	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-0092435_37	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0092435_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0092435_37	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0092435_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0092435_37	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0092435_38	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0092435_38	UniRef90	UniRef90_UPI0006A53DC0	conserved phage C-terminal domain-containing protein	NA
UHGV-0092435_38	eggNOG-mapper	1151292.QEW_4383	NA	NA
UHGV-0092435_38	Structural annotation	PF09524, PF02002, TIGR02220, TIGR02719, COG5625	NA	NA
UHGV-0092435_39	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0092435_40	UniRef90	UniRef90_A0A1C6K8U4	Helix-turn-helix	NA
UHGV-0092435_40	eggNOG-mapper	536232.CLM_1618	sequence-specific DNA binding	NA
UHGV-0092435_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092435_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092435_41	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0092435_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0092435_41	UniRef90	UniRef90_A0A1C6K8K7	Predicted transcriptional regulator	NA
UHGV-0092435_41	eggNOG-mapper	536232.CLM_1616	Helix-turn-helix XRE-family like proteins	NA
UHGV-0092435_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092435_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0092435_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA