UHGV-0092541

Genome information

Genome length 21,589 bps

CDS count 29

Completeness 56.33% (medium-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092541
vOTU ID	vOTU-026110
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194095
BioSample	SAMEA3449360
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.41
Jumbo phage	No

Genome content
Genome length	21,589 bps
GC content	53.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	93.42%
Average CDS length	697.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092541_1	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0092541_1	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0092541_2	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0092541_2	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0092541_3	UniRef90	UniRef90_A0A8I0Q2G2	Protein phosphatase	NA
UHGV-0092541_3	eggNOG-mapper	478749.BRYFOR_07649	NA	NA
UHGV-0092541_3	AcrCatalog	cluster_13845	NA	NA
UHGV-0092541_4	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0092541_4	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0092541_4	eggNOG-mapper	1567012.A0A0A7RTH0_9VIRU	endonuclease activity	NA
UHGV-0092541_6	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0092541_6	UniRef90	UniRef90_A0A6N2W7C0	HNH endonuclease	NA
UHGV-0092541_6	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0092541_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0092541_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0092541_6	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0092541_8	PHROG	phrog_1863	NA	unknown function
UHGV-0092541_8	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0092541_9	PHROG	phrog_443	holin	lysis
UHGV-0092541_9	UniRef90	UniRef90_UPI001B3C9F75	holin	NA
UHGV-0092541_9	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0092541_9	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0092541_9	Structural annotation	PF16945	NA	NA
UHGV-0092541_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0092541_12	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-0092541_12	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0092541_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0092541_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0092541_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0092541_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0092541_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0092541_13	UniRef90	UniRef90_A0A3R6NU07	Phage portal protein	NA
UHGV-0092541_13	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0092541_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0092541_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0092541_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0092541_14	KOfam	K06904	NA	NA
UHGV-0092541_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0092541_14	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0092541_14	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0092541_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0092541_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0092541_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0092541_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0092541_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0092541_15	UniRef90	UniRef90_R7FC89	Phage major capsid protein HK97 family	NA
UHGV-0092541_15	eggNOG-mapper	1536769.P40081_01075	Phage capsid family	NA
UHGV-0092541_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0092541_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0092541_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0092541_15	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0092541_17	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0092541_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0092541_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0092541_18	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0092541_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0092541_19	Structural annotation	TIGR01725	NA	NA
UHGV-0092541_20	Structural annotation	PF05657	NA	NA
UHGV-0092541_21	PHROG	phrog_88	major tail protein	tail
UHGV-0092541_21	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0092541_21	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-0092541_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0092541_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0092541_23	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0092541_23	UniRef90	UniRef90_A0A6N7SRV7	PhageMin_Tail domain-containing protein	NA
UHGV-0092541_23	eggNOG-mapper	1536774.H70357_10670	minor tail protein	NA
UHGV-0092541_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0092541_23	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0092541_23	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0092541_24	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0092541_24	UniRef90	UniRef90_A0A6N2W6N8	Phage tail protein	NA
UHGV-0092541_24	eggNOG-mapper	1341157.RF007C_02585	Phage tail protein	NA
UHGV-0092541_24	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0092541_24	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0092541_25	PHROG	phrog_538	minor tail protein	tail
UHGV-0092541_25	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0092541_25	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0092541_25	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0092541_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0092541_26	PHROG	phrog_1220	head protein	head and packaging
UHGV-0092541_26	eggNOG-mapper	1145276.T479_12190	NA	NA
UHGV-0092541_26	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0092541_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0092541_27	PHROG	phrog_291	endolysin	lysis
UHGV-0092541_27	UniRef90	UniRef90_A0A1M5CY92	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0092541_27	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0092541_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0092541_27	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0092541_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0092541_27	Structural annotation	PF01183, MF_00691, TIGR02869, NF003814, COG3757	NA	NA
UHGV-0092541_28	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0092541_28	UniRef90	UniRef90_A0A6G3LX22	XRE family transcriptional regulator	NA
UHGV-0092541_28	eggNOG-mapper	211114.JOEF01000005_gene2238	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0092541_28	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0092541_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092541_29	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0092541_29	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0092541_29	UniRef90	UniRef90_A0A395XMY7	Addiction module antidote protein, HigA family	NA
UHGV-0092541_29	eggNOG-mapper	1410674.JNKU01000019_gene172	Helix-turn-helix XRE-family like proteins	NA
UHGV-0092541_29	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0092541_29	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA