UHGV-0092618

Genome information

vOTU vOTU-019924

Genome length 34,822 bps

CDS count 65

Completeness 87.16% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092618
vOTU ID	vOTU-019924
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_199476
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.07
Jumbo phage	No

Genome content
Genome length	34,822 bps
GC content	54.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.42%
Average CDS length	500.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092618_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0092618_1	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0092618_1	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0092618_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0092618_1	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0092618_2	PHROG	phrog_474	phosphofructokinase	other
UHGV-0092618_2	UniRef90	UniRef90_A0A1Q6KPW7	NA	NA
UHGV-0092618_2	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0092618_2	Pfam	PF19905	NA	DUF6378
UHGV-0092618_4	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0092618_4	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0092618_4	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0092618_4	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0092618_4	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0092618_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0092618_5	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0092618_5	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-0092618_5	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0092618_5	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0092618_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0092618_5	COG	COG0863	DNA modification methylase	NA
UHGV-0092618_5	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0092618_7	Structural annotation	PF21485	NA	NA
UHGV-0092618_9	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0092618_9	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0092618_9	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0092618_9	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0092618_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0092618_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092618_10	UniRef90	UniRef90_A0A1C5QDM6	Single-stranded DNA-binding protein	NA
UHGV-0092618_10	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0092618_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0092618_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0092618_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0092618_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0092618_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0092618_11	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092618_11	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-0092618_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0092618_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0092618_12	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0092618_12	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0092618_12	Structural annotation	PF05772	NA	NA
UHGV-0092618_13	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092618_13	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0092618_13	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0092618_13	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0092618_15	PHROG	phrog_4973	NA	unknown function
UHGV-0092618_15	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0092618_15	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0092618_17	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0092618_20	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0092618_20	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0092618_21	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0092618_21	eggNOG-mapper	1514668.JOOA01000002_gene1643	NA	NA
UHGV-0092618_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0092618_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0092618_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0092618_22	UniRef90	UniRef90_A0A7X5HYA7	Helix-turn-helix transcriptional regulator	NA
UHGV-0092618_22	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0092618_23	eggNOG-mapper	883114.HMPREF9709_01223	NA	NA
UHGV-0092618_23	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0092618_27	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0092618_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092618_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092618_27	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0092618_28	KOfam	K14059	int; integrase	NA
UHGV-0092618_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0092618_28	UniRef90	UniRef90_UPI001C124E9B	site-specific integrase	NA
UHGV-0092618_28	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0092618_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0092618_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092618_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0092618_28	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0092618_29	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0092618_30	Structural annotation	PF12510	NA	NA
UHGV-0092618_31	PHROG	phrog_20016	NA	unknown function
UHGV-0092618_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0092618_31	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0092618_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0092618_32	PHROG	phrog_16490	NA	unknown function
UHGV-0092618_32	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0092618_33	PHROG	phrog_22984	NA	unknown function
UHGV-0092618_34	PHROG	phrog_21718	NA	unknown function
UHGV-0092618_34	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0092618_35	PHROG	phrog_3754	NA	unknown function
UHGV-0092618_35	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0092618_37	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0092618_38	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0092618_38	PHROG	phrog_18955	NA	unknown function
UHGV-0092618_38	UniRef90	UniRef90_UPI001C035E39	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0092618_38	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0092618_38	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0092618_38	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0092618_38	COG	COG3108	NA	NA
UHGV-0092618_38	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-0092618_39	PHROG	phrog_13256	NA	unknown function
UHGV-0092618_39	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0092618_40	PHROG	phrog_1863	NA	unknown function
UHGV-0092618_40	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0092618_42	eggNOG-mapper	657322.FPR_21910	NA	NA
UHGV-0092618_43	UniRef90	UniRef90_A0A096B066	Mtd_N domain-containing protein	NA
UHGV-0092618_43	eggNOG-mapper	1226322.HMPREF1545_02881	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0092618_43	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0092618_44	PHROG	phrog_18725	NA	unknown function
UHGV-0092618_44	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0092618_44	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0092618_45	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0092618_45	PHROG	phrog_11157	NA	unknown function
UHGV-0092618_45	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0092618_45	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0092618_45	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0092618_45	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0092618_45	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0092618_45	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0092618_47	PHROG	phrog_13879	NA	unknown function
UHGV-0092618_47	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0092618_47	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0092618_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0092618_49	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0092618_49	UniRef90	UniRef90_A0A3D1JBH2	Phage tail protein (Fragment)	NA
UHGV-0092618_49	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0092618_49	COG	COG5283	Phage-related tail protein	NA
UHGV-0092618_49	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0092618_51	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0092618_52	PHROG	phrog_885	major tail protein	tail
UHGV-0092618_52	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0092618_52	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0092618_52	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0092618_53	PHROG	phrog_17405	head protein	head and packaging
UHGV-0092618_53	Structural annotation	PF11367	NA	NA
UHGV-0092618_54	PHROG	phrog_17977	NA	unknown function
UHGV-0092618_54	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0092618_54	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0092618_56	PHROG	phrog_544	major head protein	head and packaging
UHGV-0092618_56	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0092618_56	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0092618_56	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0092618_57	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0092618_57	Structural annotation	PF06810	NA	NA
UHGV-0092618_58	Structural annotation	PF18152	NA	NA
UHGV-0092618_59	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0092618_59	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0092618_59	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-0092618_59	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0092618_59	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0092618_61	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0092618_61	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0092618_61	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0092618_61	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-0092618_61	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0092618_61	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0092618_61	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0092618_61	COG	COG2369	NA	NA
UHGV-0092618_61	Structural annotation	PF03496, PF04233, MF_04142, NF040688, TIGR01641, COG2369	NA	NA
UHGV-0092618_62	PHROG	phrog_8680	NA	unknown function
UHGV-0092618_62	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0092618_62	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0092618_62	Pfam	PF14386	NA	DUF4417
UHGV-0092618_62	Structural annotation	PF14386	NA	NA
UHGV-0092618_64	PHROG	phrog_64	portal protein	head and packaging
UHGV-0092618_64	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0092618_64	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0092618_64	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0092618_64	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0092618_65	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092618_65	PHROG	phrog_10250	NA	unknown function
UHGV-0092618_65	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0092618_65	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0092618_65	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0092618_65	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0092618_65	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0092618_65	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092618_65	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA