UHGV-0092655

Genome information

Genome length 37,111 bps

CDS count 54

Completeness 97.69% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092655
vOTU ID	vOTU-014755
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_173652
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.37
Jumbo phage	No

Genome content
Genome length	37,111 bps
GC content	41.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.87%
Average CDS length	657.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092655_1	PHROG	phrog_443	holin	lysis
UHGV-0092655_1	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-0092655_1	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-0092655_1	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0092655_1	Structural annotation	PF16945	NA	NA
UHGV-0092655_2	PHROG	phrog_23452	NA	unknown function
UHGV-0092655_2	UniRef90	UniRef90_A0A174JNC4	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0092655_2	eggNOG-mapper	1280698.AUJS01000010_gene819	Putative peptidoglycan binding domain	NA
UHGV-0092655_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0092655_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0092655_2	Structural annotation	PF01471, COG3409	NA	NA
UHGV-0092655_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0092655_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0092655_3	UniRef90	UniRef90_A6BEV3	Resolvase, N-terminal domain protein	NA
UHGV-0092655_3	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0092655_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0092655_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0092655_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0092655_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0092655_3	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0092655_4	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0092655_4	UniRef90	UniRef90_A0A1Y3T5U1	NA	NA
UHGV-0092655_4	eggNOG-mapper	411470.RUMGNA_02177	belongs to the thioredoxin family	NA
UHGV-0092655_4	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0092655_5	PHROG	phrog_4431	NA	unknown function
UHGV-0092655_5	UniRef90	UniRef90_UPI001CD27D14	NA	NA
UHGV-0092655_5	eggNOG-mapper	1158602.I590_00688	Short C-terminal domain	NA
UHGV-0092655_6	PHROG	phrog_20886	NA	unknown function
UHGV-0092655_6	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0092655_6	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0092655_6	Structural annotation	PF06114	NA	NA
UHGV-0092655_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0092655_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0092655_7	UniRef90	UniRef90_A6BEU9	DNA-binding helix-turn-helix protein	NA
UHGV-0092655_7	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0092655_7	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0092655_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0092655_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0092655_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0092655_8	UniRef90	UniRef90_A0A414S2U7	XRE family transcriptional regulator	NA
UHGV-0092655_8	eggNOG-mapper	12417.Q9T1J3_9CAUD	sequence-specific DNA binding	NA
UHGV-0092655_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0092655_8	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0092655_9	Structural annotation	PF12729	NA	NA
UHGV-0092655_13	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0092655_13	PHROG	phrog_1499	NA	unknown function
UHGV-0092655_13	UniRef90	UniRef90_A0A414S2U1	Chromosome segregation protein SMC	NA
UHGV-0092655_13	eggNOG-mapper	411462.DORLON_00812	AAA ATPase domain	NA
UHGV-0092655_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-0092655_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0092655_13	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0092655_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0092655_14	UniRef90	UniRef90_UPI001E57C8F5	ATP-binding protein	NA
UHGV-0092655_14	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0092655_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0092655_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0092655_15	PHROG	phrog_2698	NA	unknown function
UHGV-0092655_15	UniRef90	UniRef90_D9R8Z5	NA	NA
UHGV-0092655_15	eggNOG-mapper	411462.DORLON_00810	NA	NA
UHGV-0092655_15	Structural annotation	PF05037	NA	NA
UHGV-0092655_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0092655_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0092655_16	UniRef90	UniRef90_R6SHV8	Helicase C-terminal domain protein	NA
UHGV-0092655_16	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0092655_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0092655_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0092655_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0092655_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0092655_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0092655_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0092655_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0092655_17	UniRef90	UniRef90_A6BET8	Primase C terminal 2 (PriCT-2)	NA
UHGV-0092655_17	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0092655_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0092655_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-0092655_17	COG	COG3598	RecA-family ATPase	NA
UHGV-0092655_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0092655_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0092655_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0092655_18	UniRef90	UniRef90_A0A173ZCZ5	Holliday junction resolvase	NA
UHGV-0092655_18	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0092655_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0092655_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0092655_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0092655_19	eggNOG-mapper	411462.DORLON_00805	NA	NA
UHGV-0092655_20	PHROG	phrog_15198	NA	unknown function
UHGV-0092655_20	UniRef90	UniRef90_UPI001EE0C335	NA	NA
UHGV-0092655_20	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0092655_20	Pfam	PF04448	NA	DUF551
UHGV-0092655_20	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0092655_23	PHROG	phrog_7024	NA	unknown function
UHGV-0092655_23	eggNOG-mapper	1410653.JHVC01000011_gene971	NA	NA
UHGV-0092655_23	AcrCatalog	cluster_1398	NA	NA
UHGV-0092655_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0092655_24	UniRef90	UniRef90_A6BET0	Sigma70_r4 domain-containing protein	NA
UHGV-0092655_24	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-0092655_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0092655_24	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0092655_26	PHROG	phrog_10226	NA	unknown function
UHGV-0092655_26	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0092655_26	Structural annotation	COG4127	NA	NA
UHGV-0092655_28	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0092655_28	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-0092655_28	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-0092655_28	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0092655_28	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0092655_28	COG	COG5484	NA	NA
UHGV-0092655_28	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0092655_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092655_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0092655_29	UniRef90	UniRef90_B0G3C9	Phage terminase, large subunit, PBSX family	NA
UHGV-0092655_29	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0092655_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0092655_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0092655_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0092655_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092655_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0092655_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0092655_30	UniRef90	UniRef90_A6BES5	Phage minor capsid protein	NA
UHGV-0092655_30	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0092655_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0092655_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0092655_31	PHROG	phrog_21033	NA	unknown function
UHGV-0092655_31	UniRef90	UniRef90_A0A173VG74	Phage minor capsid protein 2	NA
UHGV-0092655_31	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-0092655_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0092655_31	COG	COG2369	NA	NA
UHGV-0092655_31	Structural annotation	PF06152	NA	NA
UHGV-0092655_32	PHROG	phrog_3711	NA	unknown function
UHGV-0092655_32	eggNOG-mapper	411462.DORLON_00789	NA	NA
UHGV-0092655_33	KOfam	K07584	NA	NA
UHGV-0092655_33	PHROG	phrog_4478	peptidase	other
UHGV-0092655_33	UniRef90	UniRef90_A0A173TUJ7	Predicted ribosomal protein	NA
UHGV-0092655_33	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-0092655_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0092655_33	COG	COG2868	NA	NA
UHGV-0092655_33	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0092655_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0092655_34	eggNOG-mapper	411462.DORLON_00787	NA	NA
UHGV-0092655_34	AcrCatalog	cluster_74817	NA	NA
UHGV-0092655_34	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0092655_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0092655_35	UniRef90	UniRef90_A6BER6	Putative phage capsid family	NA
UHGV-0092655_35	eggNOG-mapper	411462.DORLON_00786	COG NOG20168 non supervised orthologous group	NA
UHGV-0092655_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0092655_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0092655_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0092655_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0092655_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0092655_36	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0092655_37	PHROG	phrog_3366	NA	unknown function
UHGV-0092655_37	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0092655_37	Pfam	PF20536	NA	DUF6751
UHGV-0092655_37	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0092655_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0092655_38	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0092655_38	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0092655_38	Structural annotation	PF11114	NA	NA
UHGV-0092655_39	PHROG	phrog_3266	tail completion	connector
UHGV-0092655_39	eggNOG-mapper	742765.HMPREF9457_02131	NA	NA
UHGV-0092655_39	Structural annotation	PF12691	NA	NA
UHGV-0092655_40	PHROG	phrog_3099	NA	unknown function
UHGV-0092655_40	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0092655_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0092655_41	PHROG	phrog_4450	NA	unknown function
UHGV-0092655_41	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0092655_41	Pfam	PF20378	NA	DUF6673
UHGV-0092655_41	Structural annotation	PF20378	NA	NA
UHGV-0092655_42	PHROG	phrog_706	NA	unknown function
UHGV-0092655_42	UniRef90	UniRef90_A0A174JJ83	Bacteriophage Gp15 protein	NA
UHGV-0092655_42	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0092655_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0092655_42	Structural annotation	PF06854	NA	NA
UHGV-0092655_43	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0092655_43	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0092655_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0092655_44	UniRef90	UniRef90_A0A174JJE7	Phage-related protein	NA
UHGV-0092655_44	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0092655_44	COG	COG1511	NA	NA
UHGV-0092655_44	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0092655_45	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0092655_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0092655_46	PHROG	phrog_538	minor tail protein	tail
UHGV-0092655_46	eggNOG-mapper	411462.DORLON_00775	NA	NA
UHGV-0092655_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0092655_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0092655_47	PHROG	phrog_25635	NA	unknown function
UHGV-0092655_47	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0092655_47	eggNOG-mapper	411462.DORLON_00774	NA	NA
UHGV-0092655_47	Structural annotation	PF20747	NA	NA
UHGV-0092655_48	PHROG	phrog_27545	NA	unknown function
UHGV-0092655_48	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0092655_48	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0092655_48	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0092655_49	PHROG	phrog_19695	NA	unknown function
UHGV-0092655_49	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0092655_49	Structural annotation	PF19714	NA	NA
UHGV-0092655_50	UniRef90	UniRef90_UPI00156D7781	SGNH/GDSL hydrolase family protein	NA
UHGV-0092655_50	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0092655_50	Structural annotation	PF10651	NA	NA
UHGV-0092655_53	Structural annotation	PF08244	NA	NA