UHGV-0092781

Genome information

Genome length 36,240 bps

CDS count 61

Completeness 59.46% (medium-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092781
vOTU ID	vOTU-026172
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_171979
BioSample	SAMEA3136650
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.17
Jumbo phage	No

Genome content
Genome length	36,240 bps
GC content	41.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.74%
Average CDS length	536.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092781_1	KOfam	K14059	int; integrase	NA
UHGV-0092781_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0092781_1	UniRef90	UniRef90_A0A173WTB3	Site-specific recombinase XerD	NA
UHGV-0092781_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0092781_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0092781_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0092781_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0092781_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0092781_2	PHROG	phrog_9418	NA	unknown function
UHGV-0092781_2	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0092781_2	Structural annotation	PF10233	NA	NA
UHGV-0092781_3	PHROG	phrog_87	metallo-protease	other
UHGV-0092781_3	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0092781_3	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0092781_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0092781_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0092781_4	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-0092781_5	UniRef90	UniRef90_A0A1C5W1A8	PBECR3 domain-containing protein	NA
UHGV-0092781_5	eggNOG-mapper	748727.CLJU_c39230	NA	NA
UHGV-0092781_5	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0092781_5	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-0092781_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0092781_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0092781_6	UniRef90	UniRef90_UPI000465BF42	helix-turn-helix domain-containing protein	NA
UHGV-0092781_6	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-0092781_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092781_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092781_6	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0092781_7	UniRef90	UniRef90_A0A6N9LK73	XRE family transcriptional regulator	NA
UHGV-0092781_7	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0092781_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0092781_7	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0092781_8	UniRef90	UniRef90_A0A414SEP7	XRE family transcriptional regulator	NA
UHGV-0092781_8	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0092781_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092781_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0092781_10	PHROG	phrog_9188	NA	unknown function
UHGV-0092781_10	UniRef90	UniRef90_A0A316PYR3	Adenylate kinase	NA
UHGV-0092781_10	Structural annotation	PF11023	NA	NA
UHGV-0092781_12	PHROG	phrog_9607	NA	unknown function
UHGV-0092781_12	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0092781_12	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0092781_13	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-0092781_14	PHROG	phrog_5765	NA	unknown function
UHGV-0092781_14	UniRef90	UniRef90_A0A6L8XUI5	BC1881 family protein	NA
UHGV-0092781_14	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0092781_14	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0092781_15	PHROG	phrog_3292	NA	unknown function
UHGV-0092781_15	UniRef90	UniRef90_A0A414SEZ1	KTSC domain-containing protein	NA
UHGV-0092781_15	eggNOG-mapper	679201.HMPREF9334_01266	KTSC domain	NA
UHGV-0092781_15	Pfam	PF13619	KTSC domain	KTSC
UHGV-0092781_15	Structural annotation	PF13619	NA	NA
UHGV-0092781_16	UniRef90	UniRef90_UPI0015705952	toxin HipA	NA
UHGV-0092781_16	eggNOG-mapper	478749.BRYFOR_05417	NA	NA
UHGV-0092781_21	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092781_21	UniRef90	UniRef90_A0A415L5E5	Endonuclease	NA
UHGV-0092781_21	eggNOG-mapper	97139.C824_05807	YqaJ-like viral recombinase domain	NA
UHGV-0092781_21	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0092781_21	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0092781_21	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0092781_21	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0092781_22	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0092781_22	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0092781_22	UniRef90	UniRef90_A0A415L5D0	Recombinase RecT	NA
UHGV-0092781_22	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0092781_22	Pfam	PF03837	RecT family	RecT
UHGV-0092781_22	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0092781_22	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0092781_22	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0092781_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0092781_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0092781_23	UniRef90	UniRef90_A0A415L586	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0092781_23	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0092781_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0092781_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0092781_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0092781_24	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0092781_24	UniRef90	UniRef90_A0A415L5F5	NA	NA
UHGV-0092781_24	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0092781_24	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0092781_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0092781_24	Structural annotation	PF14297	NA	NA
UHGV-0092781_27	UniRef90	UniRef90_UPI000E47F582	helix-turn-helix domain-containing protein	NA
UHGV-0092781_27	eggNOG-mapper	97139.C824_02817	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0092781_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0092781_27	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0092781_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0092781_29	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0092781_29	UniRef90	UniRef90_UPI000E507582	phage antirepressor KilAC domain-containing protein	NA
UHGV-0092781_29	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0092781_29	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0092781_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0092781_29	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0092781_29	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0092781_30	PHROG	phrog_19011	NA	unknown function
UHGV-0092781_30	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0092781_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0092781_31	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0092781_31	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0092781_31	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0092781_32	Structural annotation	PF09855, COG3478	NA	NA
UHGV-0092781_33	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0092781_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0092781_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0092781_34	UniRef90	UniRef90_A0A415L5B5	Terminase small subunit	NA
UHGV-0092781_34	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0092781_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0092781_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0092781_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0092781_35	UniRef90	UniRef90_R9JJZ1	RHH_1 domain-containing protein	NA
UHGV-0092781_35	eggNOG-mapper	397287.C807_01320	NA	NA
UHGV-0092781_35	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0092781_37	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092781_37	UniRef90	UniRef90_A0A6L9EPW1	HNHc domain-containing protein	NA
UHGV-0092781_37	eggNOG-mapper	1141137.K4F7W4_9CAUD	HNH endonuclease	NA
UHGV-0092781_37	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0092781_37	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0092781_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0092781_37	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0092781_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092781_38	PHROG	phrog_10250	NA	unknown function
UHGV-0092781_38	UniRef90	UniRef90_UPI0011DDB413	terminase	NA
UHGV-0092781_38	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0092781_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092781_38	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0092781_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0092781_39	UniRef90	UniRef90_UPI0011DCF338	phage portal protein	NA
UHGV-0092781_39	eggNOG-mapper	394503.Ccel_3049	NA	NA
UHGV-0092781_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0092781_40	PHROG	phrog_25639	NA	unknown function
UHGV-0092781_40	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0092781_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0092781_41	UniRef90	UniRef90_A0A414EGE0	Minor capsid protein	NA
UHGV-0092781_41	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0092781_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0092781_41	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0092781_41	Structural annotation	PF06152	NA	NA
UHGV-0092781_43	UniRef90	UniRef90_UPI0011C722A7	ribbon-helix-helix domain-containing protein	NA
UHGV-0092781_43	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0092781_43	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0092781_44	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0092781_44	UniRef90	UniRef90_A0A416N3H4	ORF6N domain-containing protein	NA
UHGV-0092781_44	eggNOG-mapper	478749.BRYFOR_07644	ORF6N domain	NA
UHGV-0092781_44	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0092781_44	Structural annotation	PF10543, PF13058, TIGR02681, COG3646, COG2856	NA	NA
UHGV-0092781_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0092781_46	UniRef90	UniRef90_UPI001D02A5C9	phage scaffolding protein	NA
UHGV-0092781_46	eggNOG-mapper	1262449.CP6013_3198	Phage minor structural protein GP20	NA
UHGV-0092781_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0092781_46	Structural annotation	PF06810	NA	NA
UHGV-0092781_47	PHROG	phrog_212	major head protein	head and packaging
UHGV-0092781_47	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-0092781_47	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0092781_47	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0092781_48	PHROG	phrog_15682	NA	unknown function
UHGV-0092781_48	eggNOG-mapper	469618.FVAG_01311	NA	NA
UHGV-0092781_49	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0092781_49	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0092781_50	PHROG	phrog_8710	NA	unknown function
UHGV-0092781_50	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0092781_50	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0092781_51	eggNOG-mapper	33035.JPJF01000093_gene2248	NA	NA
UHGV-0092781_51	Structural annotation	PF11114	NA	NA
UHGV-0092781_52	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0092781_52	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0092781_52	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0092781_52	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0092781_52	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0092781_53	PHROG	phrog_820	major tail protein	tail
UHGV-0092781_53	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0092781_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0092781_54	PHROG	phrog_8300	NA	unknown function
UHGV-0092781_54	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0092781_54	Structural annotation	PF06854	NA	NA
UHGV-0092781_55	PHROG	phrog_8355	NA	unknown function
UHGV-0092781_55	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0092781_55	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0092781_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0092781_55	Structural annotation	PF06854	NA	NA
UHGV-0092781_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0092781_56	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0092781_56	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0092781_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0092781_56	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0092781_57	PHROG	phrog_1194	NA	unknown function
UHGV-0092781_57	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0092781_57	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0092781_58	PHROG	phrog_6616	tail protein	tail
UHGV-0092781_58	UniRef90	UniRef90_A0A414EG21	Tail fiber domain-containing protein	NA
UHGV-0092781_58	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0092781_58	COG	COG4926	Phage-related protein	NA
UHGV-0092781_58	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0092781_59	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-0092781_60	PHROG	phrog_199	holin	lysis
UHGV-0092781_60	UniRef90	UniRef90_UPI000930DB75	phage holin family protein	NA
UHGV-0092781_60	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0092781_60	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0092781_60	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0092781_60	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0092781_60	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0092781_61	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0092781_61	PHROG	phrog_3088	amidase	lysis
UHGV-0092781_61	UniRef90	UniRef90_A0A414EG98	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0092781_61	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0092781_61	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0092781_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0092781_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0092781_61	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA