UHGV-0092916

Genome information

Genome length 30,448 bps

CDS count 40

Completeness 95.91% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092916
vOTU ID	vOTU-060547
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_180583
BioSample	SAMEA3449335
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.34
Jumbo phage	No

Genome content
Genome length	30,448 bps
GC content	50.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	90.44%
Average CDS length	693.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092916_1	eggNOG-mapper	1235792.C808_02183	NA	NA
UHGV-0092916_2	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0092916_2	PHROG	phrog_5696	NA	unknown function
UHGV-0092916_2	UniRef90	UniRef90_A0A898FVT1	N-6 DNA methylase	NA
UHGV-0092916_2	eggNOG-mapper	428125.CLOLEP_01378	N-6 DNA Methylase	NA
UHGV-0092916_2	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0092916_2	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0092916_2	Structural annotation	COG0286	NA	NA
UHGV-0092916_4	UniRef90	UniRef90_A0A328UDW0	SCP domain-containing protein	NA
UHGV-0092916_4	eggNOG-mapper	1423775.BAMN01000004_gene1554	Cysteine-rich secretory protein family	NA
UHGV-0092916_4	Pfam	PF00188	Cysteine-rich secretory protein family	CAP
UHGV-0092916_4	COG	COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	NA
UHGV-0092916_5	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0092916_5	UniRef90	UniRef90_A0A4D7B2Q5	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0092916_5	eggNOG-mapper	411467.BACCAP_03937	COG COG0175 3-phosphoadenosine 5-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes	NA
UHGV-0092916_5	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0092916_5	Structural annotation	PF01507, MF_01161, NF005316, COG1606	NA	NA
UHGV-0092916_6	UniRef90	UniRef90_A0A328UEW9	YwbE family protein	NA
UHGV-0092916_6	eggNOG-mapper	153721.MYP_4612	NA	NA
UHGV-0092916_6	Pfam	PF09962	NA	DUF2196
UHGV-0092916_6	NCBIFam	TIGR03833.1	YwbE family protein	NA
UHGV-0092916_6	COG	COG4895	NA	NA
UHGV-0092916_7	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0092916_7	PHROG	phrog_95	integrase	integration and excision
UHGV-0092916_7	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-0092916_7	eggNOG-mapper	1235835.C814_03413	Resolvase, N terminal domain	NA
UHGV-0092916_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0092916_7	Pfam	PF07508	Recombinase	Recombinase
UHGV-0092916_7	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0092916_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0092916_7	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0092916_8	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0092916_8	UniRef90	UniRef90_A0A6N8IGI7	Addiction module toxin, HicA family	NA
UHGV-0092916_8	eggNOG-mapper	502558.EGYY_24930	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0092916_8	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0092916_8	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0092916_8	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0092916_9	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0092916_9	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0092916_9	UniRef90	UniRef90_A0A833MCF6	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0092916_9	eggNOG-mapper	1121422.AUMW01000002_gene2294	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0092916_9	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0092916_9	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0092916_9	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0092916_10	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0092916_10	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0092916_10	UniRef90	UniRef90_A0A1Y4S764	BRCT domain-containing protein	NA
UHGV-0092916_10	eggNOG-mapper	264732.Moth_1154	HELICc2	NA
UHGV-0092916_10	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0092916_10	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0092916_10	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0092916_10	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0092916_10	COG	COG1199	Rad3-related DNA helicase DinG	NA
UHGV-0092916_11	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0092916_11	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0092916_11	UniRef90	UniRef90_A0A7X5E3N4	Helix-turn-helix domain-containing protein	NA
UHGV-0092916_11	eggNOG-mapper	1235799.C818_03510	Peptidase S24-like	NA
UHGV-0092916_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092916_11	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0092916_11	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0092916_11	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0092916_12	UniRef90	UniRef90_UPI0019671B18	transcriptional regulator	NA
UHGV-0092916_12	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0092916_17	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0092916_17	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0092916_17	UniRef90	UniRef90_A0A1Y4RAJ3	Adenylyl-sulfate reductase	NA
UHGV-0092916_17	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0092916_17	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0092916_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0092916_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0092916_18	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0092916_18	UniRef90	UniRef90_A0A7C6NZ37	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0092916_18	eggNOG-mapper	1304866.K413DRAFT_1208	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0092916_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0092916_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0092916_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0092916_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0092916_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0092916_19	PHROG	phrog_4433	NA	unknown function
UHGV-0092916_19	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0092916_19	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0092916_20	PHROG	phrog_874	NA	unknown function
UHGV-0092916_20	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0092916_20	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0092916_21	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0092916_21	UniRef90	UniRef90_UPI0004115370	methyltransferase	NA
UHGV-0092916_21	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0092916_21	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0092916_21	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0092916_21	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0092916_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0092916_22	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0092916_22	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0092916_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0092916_23	UniRef90	UniRef90_UPI00164ADA1B	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0092916_23	eggNOG-mapper	768710.DesyoDRAFT_5229	NA	NA
UHGV-0092916_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0092916_25	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0092916_25	UniRef90	UniRef90_UPI001874172A	P27 family phage terminase small subunit	NA
UHGV-0092916_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0092916_25	COG	COG5484	NA	NA
UHGV-0092916_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0092916_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0092916_26	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-0092916_26	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0092916_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0092916_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0092916_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0092916_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0092916_27	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0092916_27	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0092916_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0092916_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0092916_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0092916_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0092916_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0092916_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0092916_28	UniRef90	UniRef90_UPI00111E41DA	Clp protease ClpP	NA
UHGV-0092916_28	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0092916_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0092916_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0092916_28	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0092916_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0092916_29	UniRef90	UniRef90_UPI0018757887	phage major capsid protein	NA
UHGV-0092916_29	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0092916_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0092916_29	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0092916_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0092916_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0092916_29	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0092916_30	PHROG	phrog_749	NA	unknown function
UHGV-0092916_30	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0092916_31	PHROG	phrog_19734	NA	unknown function
UHGV-0092916_31	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0092916_31	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0092916_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0092916_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0092916_32	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-0092916_32	Structural annotation	PF05657	NA	NA
UHGV-0092916_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0092916_33	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0092916_33	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0092916_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0092916_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0092916_33	Structural annotation	TIGR01725	NA	NA
UHGV-0092916_34	PHROG	phrog_88	major tail protein	tail
UHGV-0092916_34	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0092916_34	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0092916_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0092916_34	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0092916_35	Structural annotation	PF11836	NA	NA
UHGV-0092916_36	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0092916_36	UniRef90	UniRef90_A0A7X8V908	Phage tail protein	NA
UHGV-0092916_36	eggNOG-mapper	431943.CKL_2631	tape measure	NA
UHGV-0092916_36	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0092916_36	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0092916_37	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0092916_37	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0092916_38	PHROG	phrog_13879	NA	unknown function
UHGV-0092916_38	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0092916_38	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0092916_40	PHROG	phrog_11157	NA	unknown function
UHGV-0092916_40	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0092916_40	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0092916_40	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0092916_40	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0092916_40	Structural annotation	PF09136, MF_04116, NF033814, COG2372	NA	NA