UHGV-0092979

Genome information

Genome length 25,651 bps

CDS count 30

Completeness 52.59% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092979
vOTU ID	vOTU-042338
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195010
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.38
Jumbo phage	No

Genome content
Genome length	25,651 bps
GC content	49.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.40%
Average CDS length	794.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092979_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0092979_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092979_1	UniRef90	UniRef90_R5GNI9	HNH endonuclease domain protein	NA
UHGV-0092979_1	eggNOG-mapper	1120978.KB894083_gene917	HNH nucleases	NA
UHGV-0092979_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0092979_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0092979_1	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0092979_2	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0092979_2	UniRef90	UniRef90_UPI001D092ADA	P27 family phage terminase small subunit	NA
UHGV-0092979_2	eggNOG-mapper	1118057.CAGX01000043_gene499	NA	NA
UHGV-0092979_2	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0092979_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0092979_3	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0092979_3	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0092979_3	UniRef90	UniRef90_R6SK58	Methyltransferase	NA
UHGV-0092979_3	eggNOG-mapper	1235799.C818_01028	DNA methylase	NA
UHGV-0092979_3	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0092979_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0092979_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0092979_3	COG	COG0863	DNA modification methylase	NA
UHGV-0092979_3	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0092979_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0092979_4	PHROG	phrog_38038	NA	unknown function
UHGV-0092979_4	UniRef90	UniRef90_R5GII4	Cytosine-specific methyltransferase	NA
UHGV-0092979_4	eggNOG-mapper	1235799.C818_01027	C-5 cytosine-specific DNA methylase	NA
UHGV-0092979_4	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0092979_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0092979_4	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0092979_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0092979_4	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0092979_5	UniRef90	UniRef90_R5CWD1	Arc domain-containing protein	NA
UHGV-0092979_5	eggNOG-mapper	663278.Ethha_1288	NA	NA
UHGV-0092979_5	COG	COG4877	NA	NA
UHGV-0092979_5	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0092979_6	PHROG	phrog_289	GTP-binding domain	other
UHGV-0092979_6	UniRef90	UniRef90_A0A7X6CWD5	NA	NA
UHGV-0092979_6	eggNOG-mapper	877414.ATWA01000045_gene1862	DNA mediated transformation	NA
UHGV-0092979_6	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-0092979_6	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-0092979_6	Structural annotation	PF18306, MF_01575, TIGR00732, COG0758	NA	NA
UHGV-0092979_7	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0092979_7	UniRef90	UniRef90_A0A2R2ZJK5	Virulence-like protein	NA
UHGV-0092979_7	eggNOG-mapper	665950.HMPREF1025_02644	NA	NA
UHGV-0092979_7	AcrCatalog	cluster_14489	NA	NA
UHGV-0092979_8	PHROG	phrog_3782	NA	unknown function
UHGV-0092979_8	UniRef90	UniRef90_R6SK65	NA	NA
UHGV-0092979_8	eggNOG-mapper	665956.HMPREF1032_02275	NA	NA
UHGV-0092979_8	Pfam	PF14192	NA	DUF4314
UHGV-0092979_8	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0092979_8	Structural annotation	PF14192, MF_00754, NF003018	NA	NA
UHGV-0092979_9	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-0092979_9	UniRef90	UniRef90_R6RDL0	Putative amidoligase enzyme	NA
UHGV-0092979_9	eggNOG-mapper	573061.Clocel_3982	amidoligase enzyme	NA
UHGV-0092979_9	AcrCatalog	cluster_58247	NA	NA
UHGV-0092979_9	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-0092979_9	Structural annotation	PF12224	NA	NA
UHGV-0092979_10	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-0092979_10	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0092979_10	UniRef90	UniRef90_R5GNG4	GGACT domain-containing protein	NA
UHGV-0092979_10	eggNOG-mapper	1235802.C823_05283	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-0092979_10	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-0092979_10	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0092979_10	Structural annotation	PF06094, COG2105	NA	NA
UHGV-0092979_11	PHROG	phrog_2945	NA	unknown function
UHGV-0092979_11	UniRef90	UniRef90_R6RDL5	(NiFe) hydrogenase maturation protein HypF	NA
UHGV-0092979_11	eggNOG-mapper	1235799.C818_01022	NA	NA
UHGV-0092979_12	PHROG	phrog_4709	NA	unknown function
UHGV-0092979_12	eggNOG-mapper	1341157.RF007C_02660	NA	NA
UHGV-0092979_12	AcrCatalog	cluster_3300	NA	NA
UHGV-0092979_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0092979_13	UniRef90	UniRef90_UPI000B7FA7CC	terminase large subunit	NA
UHGV-0092979_13	eggNOG-mapper	411468.CLOSCI_00208	Phage Terminase	NA
UHGV-0092979_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0092979_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0092979_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0092979_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0092979_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0092979_14	UniRef90	UniRef90_UPI0005598979	phage portal protein	NA
UHGV-0092979_14	eggNOG-mapper	665950.HMPREF1025_02651	Phage portal protein	NA
UHGV-0092979_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0092979_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0092979_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0092979_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0092979_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0092979_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0092979_15	UniRef90	UniRef90_R5GJ44	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0092979_15	eggNOG-mapper	1216932.CM240_0619	Belongs to the peptidase S14 family	NA
UHGV-0092979_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0092979_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0092979_15	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0092979_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0092979_16	UniRef90	UniRef90_R5GWX2	Phage major capsid protein HK97 family	NA
UHGV-0092979_16	eggNOG-mapper	1216932.CM240_0620	Phage major capsid protein, HK97 family	NA
UHGV-0092979_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0092979_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0092979_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0092979_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0092979_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0092979_17	UniRef90	UniRef90_A0A3D2CK45	Phage gp6-like head-tail connector protein	NA
UHGV-0092979_17	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-0092979_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0092979_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0092979_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0092979_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-0092979_18	UniRef90	UniRef90_R6RNX0	Putative phage head-tail adaptor	NA
UHGV-0092979_18	eggNOG-mapper	573061.Clocel_3973	head-tail	NA
UHGV-0092979_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0092979_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0092979_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0092979_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0092979_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0092979_19	UniRef90	UniRef90_R6RVJ8	HK97 gp10 family phage protein	NA
UHGV-0092979_19	eggNOG-mapper	693746.OBV_41500	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0092979_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0092979_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0092979_19	Structural annotation	TIGR01725	NA	NA
UHGV-0092979_20	PHROG	phrog_78	tail terminator	connector
UHGV-0092979_20	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-0092979_20	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0092979_21	PHROG	phrog_88	major tail protein	tail
UHGV-0092979_21	UniRef90	UniRef90_R5GWW6	Phi13 family phage major tail protein	NA
UHGV-0092979_21	eggNOG-mapper	1120978.KB894083_gene900	phage major tail protein, phi13 family	NA
UHGV-0092979_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0092979_21	COG	COG5492	NA	NA
UHGV-0092979_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0092979_22	PHROG	phrog_2115	tail protein	tail
UHGV-0092979_22	UniRef90	UniRef90_A0A223I0Y8	DNA-cytosine methyltransferase	NA
UHGV-0092979_22	eggNOG-mapper	1216932.CM240_0682	NA	NA
UHGV-0092979_22	Structural annotation	PF11836	NA	NA
UHGV-0092979_23	PHROG	phrog_10988	NA	unknown function
UHGV-0092979_23	eggNOG-mapper	720554.Clocl_3670	NA	NA
UHGV-0092979_24	KOfam	K03574	mutT, NUDT15, MTH2; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]	NA
UHGV-0092979_24	PHROG	phrog_1198	MutT/NUDIX hydrolase	other
UHGV-0092979_24	UniRef90	UniRef90_UPI001D065C1D	NUDIX domain-containing protein	NA
UHGV-0092979_24	eggNOG-mapper	1280666.ATVS01000057_gene2778	NUDIX domain	NA
UHGV-0092979_24	Pfam	PF00293	NUDIX domain	NUDIX
UHGV-0092979_24	COG	COG1051	ADP-ribose pyrophosphatase YjhB, NUDIX family	NA
UHGV-0092979_25	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0092979_25	UniRef90	UniRef90_A0A0B0IN21	Phage-related minor tail protein	NA
UHGV-0092979_25	eggNOG-mapper	333138.LQ50_04250	Phage tail tape measure protein	NA
UHGV-0092979_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0092979_25	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0092979_26	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0092979_26	eggNOG-mapper	1121289.JHVL01000007_gene2741	NA	NA
UHGV-0092979_26	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0092979_26	COG	COG4926	Phage-related protein	NA
UHGV-0092979_26	Structural annotation	PF14594, PF00386, PF18435, TIGR01665, NF033147, COG4926	NA	NA
UHGV-0092979_27	PHROG	phrog_19291	NA	unknown function
UHGV-0092979_27	eggNOG-mapper	180332.JTGN01000004_gene2269	NA	NA
UHGV-0092979_28	PHROG	phrog_21233	NA	unknown function
UHGV-0092979_28	UniRef90	UniRef90_R5GYT0	Toxin secretion/phage lysis holin	NA
UHGV-0092979_28	eggNOG-mapper	411460.RUMTOR_00489	Bacteriophage holin family	NA
UHGV-0092979_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0092979_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0092979_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0092979_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0092979_29	KOfam	K07273	acm; lysozyme	NA
UHGV-0092979_29	PHROG	phrog_291	endolysin	lysis
UHGV-0092979_29	UniRef90	UniRef90_R5GL83	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0092979_29	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-0092979_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0092979_29	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0092979_29	COG	COG1388	LysM repeat	NA
UHGV-0092979_29	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0092979_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0092979_30	PHROG	phrog_95	integrase	integration and excision
UHGV-0092979_30	UniRef90	UniRef90_R6RDG4	Resolvase domain	NA
UHGV-0092979_30	eggNOG-mapper	1378168.N510_01583	resolvase	NA
UHGV-0092979_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0092979_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-0092979_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0092979_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0092979_30	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA