UHGV-0092980

Genome information

Genome length 36,860 bps

CDS count 66

Completeness 99.96% (high-quality)

geNomad score 0.9516

Prediction confidence Confident

Genome information
Genome ID	UHGV-0092980
vOTU ID	vOTU-009021
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195006
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9516
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.46
Jumbo phage	No

Genome content
Genome length	36,860 bps
GC content	27.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.30%
Average CDS length	519.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0092980_8	eggNOG-mapper	279808.SH1753	Prophage endopeptidase tail	NA
UHGV-0092980_8	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0092980_8	Structural annotation	COG4926	NA	NA
UHGV-0092980_9	PHROG	phrog_6616	tail protein	tail
UHGV-0092980_10	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0092980_11	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0092980_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0092980_11	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0092980_11	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0092980_11	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0092980_12	PHROG	phrog_706	NA	unknown function
UHGV-0092980_12	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-0092980_12	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0092980_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0092980_12	Structural annotation	PF06854	NA	NA
UHGV-0092980_13	Structural annotation	PF10666	NA	NA
UHGV-0092980_14	PHROG	phrog_3099	NA	unknown function
UHGV-0092980_14	eggNOG-mapper	1449050.JNLE01000003_gene3884	NA	NA
UHGV-0092980_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0092980_15	PHROG	phrog_3266	tail completion	connector
UHGV-0092980_15	UniRef90	UniRef90_A0A846K5J6	Chloramphenicol resistance protein	NA
UHGV-0092980_15	eggNOG-mapper	536233.CLO_0890	NA	NA
UHGV-0092980_15	Structural annotation	PF12691	NA	NA
UHGV-0092980_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0092980_16	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-0092980_16	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0092980_17	PHROG	phrog_3366	NA	unknown function
UHGV-0092980_17	Structural annotation	PF20536	NA	NA
UHGV-0092980_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0092980_18	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0092980_20	PHROG	phrog_422	major head protein	head and packaging
UHGV-0092980_20	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0092980_20	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0092980_20	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0092980_21	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-0092980_21	eggNOG-mapper	642492.Clole_0820	PFAM Phage minor structural	NA
UHGV-0092980_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0092980_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0092980_23	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0092980_23	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0092980_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0092980_23	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0092980_23	COG	COG2369	NA	NA
UHGV-0092980_23	Structural annotation	PF03496, PF04233, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0092980_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0092980_24	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0092980_24	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0092980_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0092980_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0092980_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0092980_25	PHROG	phrog_10250	NA	unknown function
UHGV-0092980_25	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-0092980_25	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0092980_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0092980_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0092980_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0092980_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0092980_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0092980_26	UniRef90	UniRef90_A0A7X5CDW9	Helix-turn-helix domain-containing protein	NA
UHGV-0092980_26	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0092980_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0092980_26	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0092980_26	Structural annotation	PF07141	NA	NA
UHGV-0092980_29	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0092980_29	UniRef90	UniRef90_UPI0005D17CFF	NA	NA
UHGV-0092980_29	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0092980_29	Pfam	PF06356	NA	DUF1064
UHGV-0092980_29	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0092980_30	Structural annotation	MF_00859, COG4451	NA	NA
UHGV-0092980_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0092980_31	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0092980_34	PHROG	phrog_918	NA	unknown function
UHGV-0092980_34	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-0092980_34	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0092980_34	Pfam	PF19791	NA	DUF6275
UHGV-0092980_34	Structural annotation	PF19791	NA	NA
UHGV-0092980_44	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0092980_44	UniRef90	UniRef90_UPI001624FD69	sugar-phosphate nucleotidyltransferase	NA
UHGV-0092980_44	eggNOG-mapper	1458856.A0A059T5F9_9CAUD	methyltransferase activity	NA
UHGV-0092980_44	Structural annotation	PF05869, MF_01872, TIGR01712, COG2263	NA	NA
UHGV-0092980_49	PHROG	phrog_25509	NA	unknown function
UHGV-0092980_50	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0092980_50	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0092980_50	UniRef90	UniRef90_A0A829I425	Phage-like hydrolase	NA
UHGV-0092980_50	eggNOG-mapper	1118057.CAGX01000058_gene97	Beta-lactamase superfamily domain	NA
UHGV-0092980_50	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0092980_50	dbAPIS	APIS062	NA	NA
UHGV-0092980_50	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0092980_50	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0092980_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0092980_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0092980_51	UniRef90	UniRef90_UPI0019569AC1	recombinase RecT	NA
UHGV-0092980_51	eggNOG-mapper	1382358.JHVN01000024_gene1692	RecT protein	NA
UHGV-0092980_51	Pfam	PF03837	RecT family	RecT
UHGV-0092980_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0092980_51	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0092980_52	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0092980_52	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0092980_52	UniRef90	UniRef90_UPI0006F10C76	AAA family ATPase	NA
UHGV-0092980_52	eggNOG-mapper	1391647.AVSV01000022_gene2522	nuclear chromosome segregation	NA
UHGV-0092980_52	Pfam	PF02463	RecF/RecN/SMC N terminal domain	SMC_N
UHGV-0092980_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0092980_52	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0092980_54	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0092980_54	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0092980_54	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0092980_54	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0092980_54	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0092980_54	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0092980_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0092980_54	Structural annotation	PF10771, MF_01177, TIGR01714, COG3935	NA	NA
UHGV-0092980_58	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0092980_58	UniRef90	UniRef90_UPI000D226582	NA	NA
UHGV-0092980_58	eggNOG-mapper	1005705.HMPREF9967_1018	NA	NA
UHGV-0092980_58	Pfam	PF13643	NA	DUF4145
UHGV-0092980_58	Structural annotation	COG2250	NA	NA
UHGV-0092980_59	PHROG	phrog_14088	NA	unknown function
UHGV-0092980_59	UniRef90	UniRef90_A0A3E2WV70	Carboxypeptidase	NA
UHGV-0092980_59	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0092980_60	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0092980_60	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0092980_60	UniRef90	UniRef90_A0A2R6Y0A4	HTH cro/C1-type domain-containing protein	NA
UHGV-0092980_60	eggNOG-mapper	649747.HMPREF0083_01216	Helix-turn-helix XRE-family like proteins	NA
UHGV-0092980_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092980_60	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0092980_61	PHROG	phrog_5079	NA	unknown function
UHGV-0092980_61	eggNOG-mapper	1204534.J9QDX8_9CAUD	NA	NA
UHGV-0092980_62	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0092980_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0092980_62	UniRef90	UniRef90_C3ECH1	Transcriptional regulator, MerR	NA
UHGV-0092980_62	eggNOG-mapper	272626.lin0073	Helix-turn-helix XRE-family like proteins	NA
UHGV-0092980_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0092980_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0092980_62	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0092980_63	PHROG	phrog_6988	NA	unknown function
UHGV-0092980_63	UniRef90	UniRef90_G5F8B5	NA	NA
UHGV-0092980_63	eggNOG-mapper	635013.TherJR_2008	NA	NA
UHGV-0092980_63	PADLOC	ThsB1_00013	TIR-like	Thoeris
UHGV-0092980_63	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0092980_63	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-0092980_64	eggNOG-mapper	1235802.C823_00136	NA	NA
UHGV-0092980_65	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0092980_65	UniRef90	UniRef90_R7P756	Abi-like protein	NA
UHGV-0092980_65	eggNOG-mapper	1304284.L21TH_1494	Abi-like protein	NA
UHGV-0092980_65	PADLOC	AbiD	AbiD	Abi
UHGV-0092980_65	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0092980_65	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0092980_65	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0092980_66	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0092980_66	PHROG	phrog_95	integrase	integration and excision
UHGV-0092980_66	UniRef90	UniRef90_UPI001C108C11	recombinase family protein	NA
UHGV-0092980_66	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0092980_66	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0092980_66	Pfam	PF07508	Recombinase	Recombinase
UHGV-0092980_66	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0092980_66	Structural annotation	PF07508, PF00239, PF05384, NF041201, COG1961	NA	NA