UHGV-0093002

Genome information

Genome length 31,341 bps

CDS count 46

Completeness 58.15% (medium-quality)

geNomad score 0.9686

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093002
vOTU ID	vOTU-036418
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170036
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	58.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9686
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.22
Jumbo phage	No

Genome content
Genome length	31,341 bps
GC content	34.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.27%
Average CDS length	619.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093002_3	PHROG	phrog_10226	NA	unknown function
UHGV-0093002_3	eggNOG-mapper	1347369.CCAD010000077_gene2877	Restriction endonuclease	NA
UHGV-0093002_3	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0093002_3	Structural annotation	PF01878, COG4127	NA	NA
UHGV-0093002_4	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0093002_4	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0093002_4	UniRef90	UniRef90_A0A7X9B8B5	M23 family metallopeptidase	NA
UHGV-0093002_4	eggNOG-mapper	1507.HMPREF0262_01194	Peptidase family M23	NA
UHGV-0093002_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0093002_4	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0093002_4	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0093002_5	PHROG	phrog_1129	holin	lysis
UHGV-0093002_5	UniRef90	UniRef90_A0A6A8SI90	Holin	NA
UHGV-0093002_5	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0093002_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0093002_5	Structural annotation	PF06946	NA	NA
UHGV-0093002_6	eggNOG-mapper	1280689.AUJC01000007_gene3301	NA	NA
UHGV-0093002_7	PHROG	phrog_8687	tail protein with peptidase activity	other
UHGV-0093002_7	UniRef90	UniRef90_UPI0018E4D1D2	phage tail protein	NA
UHGV-0093002_7	eggNOG-mapper	702450.CUW_0547	NA	NA
UHGV-0093002_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0093002_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0093002_7	COG	COG4926	Phage-related protein	NA
UHGV-0093002_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0093002_8	UniRef90	UniRef90_UPI00164BC830	phage tail family protein	NA
UHGV-0093002_8	eggNOG-mapper	1329516.JPST01000017_gene418	Phage tail tape measure protein, TP901 family	NA
UHGV-0093002_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0093002_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0093002_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0093002_9	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0093002_9	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0093002_9	UniRef90	UniRef90_A0A6A8SHM0	Phage tail tape measure protein	NA
UHGV-0093002_9	eggNOG-mapper	1151292.QEW_0351	Phage-related minor tail protein	NA
UHGV-0093002_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0093002_9	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0093002_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0093002_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0093002_10	eggNOG-mapper	1476973.JMMB01000007_gene1770	NA	NA
UHGV-0093002_11	PHROG	phrog_88	major tail protein	tail
UHGV-0093002_11	UniRef90	UniRef90_B1V2P3	Phage major tail protein, Phi13 family	NA
UHGV-0093002_11	eggNOG-mapper	536233.CLO_1368	phage major tail protein, phi13 family	NA
UHGV-0093002_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0093002_11	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0093002_12	PHROG	phrog_78	tail terminator	connector
UHGV-0093002_12	UniRef90	UniRef90_A0A069AFS2	Putative Gp10 protein	NA
UHGV-0093002_12	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0093002_12	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0093002_13	UniRef90	UniRef90_UPI0018AB7791	HK97 gp10 family phage protein	NA
UHGV-0093002_13	eggNOG-mapper	1499684.CCNP01000020_gene2283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0093002_14	PHROG	phrog_11176	head-tail adaptor	connector
UHGV-0093002_14	UniRef90	UniRef90_UPI0018AAEA43	head-tail adaptor protein	NA
UHGV-0093002_14	eggNOG-mapper	1307436.PBF_22088	NA	NA
UHGV-0093002_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0093002_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0093002_14	Structural annotation	PF05521, PF07405, TIGR01563, COG5614	NA	NA
UHGV-0093002_15	PHROG	phrog_749	NA	unknown function
UHGV-0093002_15	UniRef90	UniRef90_T0D5T9	Putative gp6 protein	NA
UHGV-0093002_15	eggNOG-mapper	1211817.CCAT010000008_gene943	NA	NA
UHGV-0093002_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0093002_16	UniRef90	UniRef90_A0A173W784	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093002_16	eggNOG-mapper	1211817.CCAT010000008_gene942	Phage capsid family	NA
UHGV-0093002_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0093002_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0093002_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093002_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0093002_17	KOfam	K06904	NA	NA
UHGV-0093002_17	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0093002_17	UniRef90	UniRef90_A0A173W8F2	Phage prohead protease, HK97 family	NA
UHGV-0093002_17	eggNOG-mapper	1211817.CCAT010000008_gene941	Phage prohead protease, HK97 family	NA
UHGV-0093002_17	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0093002_17	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0093002_17	COG	COG3740	Phage head maturation protease	NA
UHGV-0093002_17	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0093002_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0093002_18	UniRef90	UniRef90_A0A844JTB9	Phage portal protein	NA
UHGV-0093002_18	eggNOG-mapper	1211817.CCAT010000008_gene940	Phage portal protein	NA
UHGV-0093002_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0093002_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0093002_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0093002_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0093002_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0093002_19	UniRef90	UniRef90_A0A844JU21	Terminase large subunit	NA
UHGV-0093002_19	eggNOG-mapper	1211817.CCAT010000008_gene939	Phage Terminase	NA
UHGV-0093002_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0093002_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0093002_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0093002_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0093002_20	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0093002_20	UniRef90	UniRef90_A0A844JQY3	Helix-turn-helix domain-containing protein	NA
UHGV-0093002_20	eggNOG-mapper	864178.E2ELI1_9CAUD	Phage terminase, small subunit	NA
UHGV-0093002_20	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0093002_20	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0093002_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0093002_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093002_22	UniRef90	UniRef90_UPI0006BF9C16	HNH endonuclease	NA
UHGV-0093002_22	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0093002_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093002_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093002_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093002_23	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0093002_25	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0093002_25	PHROG	phrog_200	lipoprotein	other
UHGV-0093002_25	UniRef90	UniRef90_A0A844JUB3	Prohibitin family protein	NA
UHGV-0093002_25	eggNOG-mapper	702450.CUW_0416	COG0330 Membrane protease subunits stomatin prohibitin homologs	NA
UHGV-0093002_25	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0093002_25	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0093002_25	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0093002_36	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0093002_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093002_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093002_38	UniRef90	UniRef90_A0A6I1BC99	Single-stranded DNA-binding protein	NA
UHGV-0093002_38	eggNOG-mapper	702450.CUW_0167	Single-stranded DNA-binding protein	NA
UHGV-0093002_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093002_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093002_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093002_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093002_38	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0093002_40	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0093002_40	UniRef90	UniRef90_A0A6I1BHM8	Sigma70_r2 domain-containing protein	NA
UHGV-0093002_41	PHROG	phrog_398	NA	unknown function
UHGV-0093002_41	UniRef90	UniRef90_UPI0006C0DACF	putative HNHc nuclease	NA
UHGV-0093002_41	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0093002_41	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0093002_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093002_44	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0093002_44	eggNOG-mapper	1235798.C817_02593	NA	NA
UHGV-0093002_44	Structural annotation	PF21578	NA	NA