UHGV-0093005

Genome information

Genome length 27,273 bps

CDS count 44

Completeness 68.88% (medium-quality)

geNomad score 0.9604

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093005
vOTU ID	vOTU-025385
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170037
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9604
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.03
Jumbo phage	No

Genome content
Genome length	27,273 bps
GC content	28.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	86.74%
Average CDS length	539.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093005_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0093005_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0093005_1	UniRef90	UniRef90_A0A1C5VEH2	LexA repressor	NA
UHGV-0093005_1	eggNOG-mapper	1301100.HG529301_gene3133	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0093005_1	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0093005_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0093005_1	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0093005_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0093005_1	HAMAP	MF_00015	LexA repressor [lexA]	NA
UHGV-0093005_1	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0093005_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0093005_3	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0093005_3	UniRef90	UniRef90_A0A644VK06	HTH cro/C1-type domain-containing protein	NA
UHGV-0093005_3	eggNOG-mapper	1095750.HMPREF9970_1686	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093005_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0093005_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093005_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0093005_5	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093005_5	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0093005_5	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0093005_5	Structural annotation	PF21578	NA	NA
UHGV-0093005_7	eggNOG-mapper	573061.Clocel_2949	NA	NA
UHGV-0093005_7	Structural annotation	PF05171, TIGR04108, COG3721	NA	NA
UHGV-0093005_9	UniRef90	UniRef90_UPI00129E49C1	aspartyl-phosphate phosphatase Spo0E family protein	NA
UHGV-0093005_9	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0093005_11	PHROG	phrog_4292	NA	unknown function
UHGV-0093005_11	UniRef90	UniRef90_A8ATM6	Gp68	NA
UHGV-0093005_13	PHROG	phrog_5558	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0093005_14	PHROG	phrog_12305	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0093005_14	UniRef90	UniRef90_UPI0013F06848	ParB/RepB/Spo0J family partition protein	NA
UHGV-0093005_14	eggNOG-mapper	485918.Cpin_3847	ParB-like nuclease domain	NA
UHGV-0093005_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0093005_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0093005_14	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0093005_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093005_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093005_15	UniRef90	UniRef90_UPI00129D54B7	single-stranded DNA-binding protein	NA
UHGV-0093005_15	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0093005_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093005_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093005_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093005_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093005_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0093005_21	UniRef90	UniRef90_A0A0B3VH46	Sigma70_r4 domain-containing protein	NA
UHGV-0093005_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0093005_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0093005_22	UniRef90	UniRef90_UPI00070A03A8	tyrosine-type recombinase/integrase	NA
UHGV-0093005_22	eggNOG-mapper	1294142.CINTURNW_1679	Phage integrase family	NA
UHGV-0093005_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093005_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093005_22	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-0093005_23	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0093005_23	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0093005_23	UniRef90	UniRef90_UPI0018A92433	recombinase family protein	NA
UHGV-0093005_23	eggNOG-mapper	646529.Desaci_1981	Resolvase, N terminal domain	NA
UHGV-0093005_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0093005_23	Pfam	PF18010	Cry35Ab1 HTH C-terminal domain	HTH_49
UHGV-0093005_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0093005_23	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0093005_24	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0093005_24	UniRef90	UniRef90_UPI0013F12356	phage terminase small subunit	NA
UHGV-0093005_24	eggNOG-mapper	1151292.QEW_4542	DNA packaging	NA
UHGV-0093005_24	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0093005_24	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0093005_24	COG	COG5484	NA	NA
UHGV-0093005_24	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0093005_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093005_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0093005_26	UniRef90	UniRef90_A0A0B3VH41	Terminase	NA
UHGV-0093005_26	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0093005_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0093005_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093005_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0093005_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0093005_27	UniRef90	UniRef90_UPI00129DA072	phage portal protein	NA
UHGV-0093005_27	eggNOG-mapper	1415775.U729_2601	NA	NA
UHGV-0093005_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0093005_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0093005_28	UniRef90	UniRef90_UPI00129E2690	capsid protein	NA
UHGV-0093005_28	eggNOG-mapper	1305708.M9Q2F2_9CAUD	Phage minor capsid protein 2	NA
UHGV-0093005_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0093005_28	Structural annotation	PF06152	NA	NA
UHGV-0093005_30	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0093005_30	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-0093005_30	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0093005_30	Structural annotation	PF10788	NA	NA
UHGV-0093005_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0093005_31	UniRef90	UniRef90_UPI00129DE889	capsid protein	NA
UHGV-0093005_31	eggNOG-mapper	195103.CPF_0956	NA	NA
UHGV-0093005_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0093005_32	PHROG	phrog_1378	NA	unknown function
UHGV-0093005_32	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0093005_32	eggNOG-mapper	1391647.AVSV01000003_gene1809	NA	NA
UHGV-0093005_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0093005_33	eggNOG-mapper	1280692.AUJL01000027_gene2158	NA	NA
UHGV-0093005_34	PHROG	phrog_8710	NA	unknown function
UHGV-0093005_34	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0093005_34	eggNOG-mapper	717606.PaecuDRAFT_3126	NA	NA
UHGV-0093005_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0093005_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0093005_35	UniRef90	UniRef90_UPI00058FDD53	minor capsid protein	NA
UHGV-0093005_35	eggNOG-mapper	1415775.U729_2609	NA	NA
UHGV-0093005_36	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0093005_36	UniRef90	UniRef90_UPI00129ED4DA	minor capsid protein	NA
UHGV-0093005_36	eggNOG-mapper	1280692.AUJL01000027_gene2155	NA	NA
UHGV-0093005_36	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0093005_36	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0093005_37	PHROG	phrog_820	major tail protein	tail
UHGV-0093005_37	UniRef90	UniRef90_U2PYP6	Big_5 domain-containing protein	NA
UHGV-0093005_37	eggNOG-mapper	1280692.AUJL01000027_gene2154	domain, Protein	NA
UHGV-0093005_37	COG	COG5492	NA	NA
UHGV-0093005_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0093005_38	PHROG	phrog_8300	NA	unknown function
UHGV-0093005_38	eggNOG-mapper	1294142.CINTURNW_1036	NA	NA
UHGV-0093005_38	Structural annotation	PF06896	NA	NA
UHGV-0093005_39	PHROG	phrog_8355	NA	unknown function
UHGV-0093005_39	UniRef90	UniRef90_UPI00129D77AF	Gp15 family bacteriophage protein	NA
UHGV-0093005_39	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-0093005_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0093005_39	Structural annotation	PF06854	NA	NA
UHGV-0093005_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0093005_40	UniRef90	UniRef90_UPI0003F4F1A1	membrane protein	NA
UHGV-0093005_40	eggNOG-mapper	1391647.AVSV01000003_gene1817	phage tail tape measure protein	NA
UHGV-0093005_40	COG	COG1511	NA	NA
UHGV-0093005_41	PHROG	phrog_1194	NA	unknown function
UHGV-0093005_41	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0093005_41	eggNOG-mapper	1151292.QEW_2422	NA	NA
UHGV-0093005_41	Pfam	PF20458	NA	DUF6711
UHGV-0093005_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0093005_42	PHROG	phrog_2566	NA	unknown function
UHGV-0093005_42	UniRef90	UniRef90_A0A7V8IA60	NA	NA
UHGV-0093005_42	eggNOG-mapper	1294142.CINTURNW_1704	NA	NA
UHGV-0093005_43	PHROG	phrog_1401	NA	unknown function
UHGV-0093005_43	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0093005_43	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0093005_43	Structural annotation	PF07761	NA	NA
UHGV-0093005_44	PHROG	phrog_6616	tail protein	tail
UHGV-0093005_44	UniRef90	UniRef90_R7F857	Phage minor structural protein	NA
UHGV-0093005_44	eggNOG-mapper	1499683.CCFF01000014_gene3896	Phage minor structural protein	NA
UHGV-0093005_44	COG	COG4926	Phage-related protein	NA