UHGV-0093006

Genome information

Genome length 19,551 bps

CDS count 32

Completeness 55.65% (medium-quality)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093006
vOTU ID	vOTU-040721
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_170041
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.24
Jumbo phage	No

Genome content
Genome length	19,551 bps
GC content	35.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.10%
Average CDS length	567.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093006_1	PHROG	phrog_24388	NA	unknown function
UHGV-0093006_1	UniRef90	UniRef90_A0A844JPA6	NA	NA
UHGV-0093006_1	eggNOG-mapper	1414720.CBYM010000001_gene710	NA	NA
UHGV-0093006_2	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-0093006_3	PHROG	phrog_3558	tail protein	tail
UHGV-0093006_3	UniRef90	UniRef90_A0A173W9S4	Phage-related protein	NA
UHGV-0093006_3	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-0093006_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0093006_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0093006_3	COG	COG4926	Phage-related protein	NA
UHGV-0093006_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0093006_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0093006_4	UniRef90	UniRef90_A0A173W6R1	Phage-related protein	NA
UHGV-0093006_4	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-0093006_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0093006_4	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0093006_5	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0093006_5	UniRef90	UniRef90_UPI000C7A2D83	phage tail tape measure protein	NA
UHGV-0093006_5	eggNOG-mapper	1414720.CBYM010000001_gene707	tail tape measure protein	NA
UHGV-0093006_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0093006_6	eggNOG-mapper	1414720.CBYM010000040_gene1654	NA	NA
UHGV-0093006_7	eggNOG-mapper	457396.CSBG_01055	NA	NA
UHGV-0093006_8	PHROG	phrog_885	major tail protein	tail
UHGV-0093006_8	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-0093006_8	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0093006_9	PHROG	phrog_957	head protein	head and packaging
UHGV-0093006_9	UniRef90	UniRef90_UPI0004B43D30	NA	NA
UHGV-0093006_9	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-0093006_9	Pfam	PF11367	NA	DUF3168
UHGV-0093006_9	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0093006_10	UniRef90	UniRef90_A0A133N6J9	Phage protein, HK97 gp10 family	NA
UHGV-0093006_10	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0093006_10	Structural annotation	TIGR01725	NA	NA
UHGV-0093006_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0093006_11	UniRef90	UniRef90_A0A6B0DZN9	Phage head closure protein	NA
UHGV-0093006_11	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0093006_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0093006_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0093006_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0093006_12	PHROG	phrog_5223	neck protein	connector
UHGV-0093006_12	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-0093006_12	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0093006_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0093006_12	Structural annotation	TIGR01560	NA	NA
UHGV-0093006_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0093006_14	UniRef90	UniRef90_A0A174PEL0	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093006_14	eggNOG-mapper	1382358.JHVN01000024_gene1707	Phage capsid family	NA
UHGV-0093006_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0093006_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0093006_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093006_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0093006_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0093006_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0093006_15	UniRef90	UniRef90_A0A316P3G8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0093006_15	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0093006_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0093006_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0093006_15	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0093006_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0093006_17	UniRef90	UniRef90_A0A174PI69	Phage portal protein, HK97 family	NA
UHGV-0093006_17	eggNOG-mapper	1414720.CBYM010000040_gene1645	Portal protein	NA
UHGV-0093006_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0093006_17	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0093006_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0093006_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0093006_18	UniRef90	UniRef90_A0A174PIP2	Phage terminase-like protein, large subunit	NA
UHGV-0093006_18	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-0093006_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0093006_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0093006_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0093006_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0093006_19	PHROG	phrog_1066	NA	unknown function
UHGV-0093006_19	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0093006_19	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0093006_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0093006_20	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0093006_20	UniRef90	UniRef90_A0A174PE70	HNHc domain-containing protein	NA
UHGV-0093006_20	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0093006_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093006_20	Pfam	PF13671	AAA domain	AAA_33
UHGV-0093006_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093006_20	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0093006_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093006_22	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-0093006_28	PHROG	phrog_5459	NA	unknown function
UHGV-0093006_28	eggNOG-mapper	1033737.CAEV01000076_gene533	NA	NA
UHGV-0093006_31	UniRef90	UniRef90_A0A6I3NF12	Helix-turn-helix domain-containing protein	NA
UHGV-0093006_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093006_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0093006_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093006_32	UniRef90	UniRef90_A0A6I3NDD5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0093006_32	eggNOG-mapper	702450.CUW_0526	Endodeoxyribonuclease RusA	NA
UHGV-0093006_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0093006_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0093006_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA