UHGV-0093040

Genome information

Genome length 18,866 bps

CDS count 23

Completeness 56.10% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093040
vOTU ID	vOTU-023614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_188785
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.46
Jumbo phage	No

Genome content
Genome length	18,866 bps
GC content	45.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	98.49%
Average CDS length	815.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093040_1	PHROG	phrog_2412	NA	unknown function
UHGV-0093040_1	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0093040_1	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0093040_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093040_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0093040_2	UniRef90	UniRef90_A0A3R6UPU9	PBSX family phage terminase large subunit	NA
UHGV-0093040_2	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0093040_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0093040_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0093040_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093040_2	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0093040_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0093040_3	UniRef90	UniRef90_UPI001915E72C	phage portal protein	NA
UHGV-0093040_3	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0093040_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0093040_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0093040_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0093040_4	UniRef90	UniRef90_UPI001D2C4106	phage minor capsid protein	NA
UHGV-0093040_4	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0093040_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0093040_4	COG	COG2369	NA	NA
UHGV-0093040_4	Structural annotation	PF06152	NA	NA
UHGV-0093040_6	KOfam	K07584	NA	NA
UHGV-0093040_6	PHROG	phrog_4478	peptidase	other
UHGV-0093040_6	UniRef90	UniRef90_A0A2Z4UEY6	Ribosomal-processing cysteine protease Prp	NA
UHGV-0093040_6	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0093040_6	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0093040_6	COG	COG2868	NA	NA
UHGV-0093040_6	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0093040_7	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0093040_7	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0093040_8	PHROG	phrog_267	major head protein	head and packaging
UHGV-0093040_8	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0093040_8	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0093040_8	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0093040_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0093040_9	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0093040_9	eggNOG-mapper	1234679.BN424_2139	NA	NA
UHGV-0093040_10	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0093040_10	UniRef90	UniRef90_UPI00093A08E9	putative minor capsid protein	NA
UHGV-0093040_10	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0093040_10	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0093040_10	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0093040_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0093040_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0093040_11	UniRef90	UniRef90_UPI001D4A767B	minor capsid protein	NA
UHGV-0093040_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0093040_11	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0093040_12	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0093040_12	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0093040_12	Structural annotation	PF12691	NA	NA
UHGV-0093040_13	PHROG	phrog_820	major tail protein	tail
UHGV-0093040_13	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0093040_13	eggNOG-mapper	665959.HMPREF1013_00194	domain, Protein	NA
UHGV-0093040_13	COG	COG5492	NA	NA
UHGV-0093040_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0093040_14	Structural annotation	PF10666	NA	NA
UHGV-0093040_15	PHROG	phrog_706	NA	unknown function
UHGV-0093040_15	UniRef90	UniRef90_UPI0011DD2DB5	Gp15 family bacteriophage protein	NA
UHGV-0093040_15	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-0093040_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0093040_15	Structural annotation	PF06854	NA	NA
UHGV-0093040_16	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0093040_16	UniRef90	UniRef90_A0A2T3EZI8	PhageMin_Tail domain-containing protein	NA
UHGV-0093040_16	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0093040_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0093040_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0093040_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0093040_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0093040_17	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0093040_17	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0093040_18	PHROG	phrog_5555	tail protein	tail
UHGV-0093040_18	UniRef90	UniRef90_A0A7Y6UBG4	Prophage_tailD1 domain-containing protein (Fragment)	NA
UHGV-0093040_18	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0093040_18	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0093040_18	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0093040_19	PHROG	phrog_5555	tail protein	tail
UHGV-0093040_19	UniRef90	UniRef90_UPI001484ED73	phage tail protein	NA
UHGV-0093040_19	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-0093040_19	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0093040_19	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0093040_19	COG	COG4926	Phage-related protein	NA
UHGV-0093040_20	PHROG	phrog_372	tail protein	tail
UHGV-0093040_20	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0093040_20	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0093040_20	Pfam	PF05895	NA	DUF859
UHGV-0093040_20	COG	COG4675	Phage tail collar domain	NA
UHGV-0093040_20	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0093040_21	PHROG	phrog_937	hemolysin	other
UHGV-0093040_21	eggNOG-mapper	1235800.C819_01426	NA	NA
UHGV-0093040_22	PHROG	phrog_1129	holin	lysis
UHGV-0093040_22	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0093040_22	eggNOG-mapper	537013.CLOSTMETH_01754	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0093040_22	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0093040_22	Structural annotation	PF16079	NA	NA
UHGV-0093040_23	PHROG	phrog_2649	endolysin	lysis
UHGV-0093040_23	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0093040_23	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0093040_23	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0093040_23	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0093040_23	Structural annotation	PF01476, TIGR02899, COG1388	NA	NA