UHGV-0093065

Genome information

vOTU vOTU-042027

Genome length 37,005 bps

CDS count 57

Completeness 61.36% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093065
vOTU ID	vOTU-042027
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_177604
BioSample	SAMEA3449190
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	61.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47
Jumbo phage	No

Genome content
Genome length	37,005 bps
GC content	39.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.98%
Average CDS length	600.58 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093065_1	PHROG	phrog_38078	NA	unknown function
UHGV-0093065_1	UniRef90	UniRef90_A0A843JJA9	CHAP domain-containing protein	NA
UHGV-0093065_1	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0093065_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0093065_1	COG	COG3942	Surface antigen	NA
UHGV-0093065_1	Structural annotation	PF06672, TIGR02594, COG4322	NA	NA
UHGV-0093065_2	PHROG	phrog_199	holin	lysis
UHGV-0093065_2	UniRef90	UniRef90_A0A7X8C3V8	Phage holin family protein	NA
UHGV-0093065_2	eggNOG-mapper	1235793.C809_02280	Bacteriophage holin family	NA
UHGV-0093065_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0093065_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0093065_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0093065_3	PHROG	phrog_6	baseplate protein	tail
UHGV-0093065_3	eggNOG-mapper	552398.HMPREF0866_01598	Baseplate J-like protein	NA
UHGV-0093065_3	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0093065_3	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0093065_4	PHROG	phrog_15729	baseplate protein	tail
UHGV-0093065_4	UniRef90	UniRef90_A0A358PQ68	Early E1A protein	NA
UHGV-0093065_4	eggNOG-mapper	1519439.JPJG01000059_gene1936	NA	NA
UHGV-0093065_4	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0093065_5	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0093065_5	eggNOG-mapper	445972.ANACOL_03373	P2 GpU family protein	NA
UHGV-0093065_5	COG	COG3499	NA	NA
UHGV-0093065_6	KOfam	K06905	NA	NA
UHGV-0093065_6	PHROG	phrog_52	tail protein	tail
UHGV-0093065_6	eggNOG-mapper	1508644.SFBmNL_00146	COG3500 Phage protein D	NA
UHGV-0093065_6	COG	COG3500	NA	NA
UHGV-0093065_6	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0093065_7	PHROG	phrog_46	tail protein	tail
UHGV-0093065_7	UniRef90	UniRef90_A0A413PG48	LysM domain-containing protein	NA
UHGV-0093065_7	eggNOG-mapper	935948.KE386495_gene1178	Phage Tail Protein X	NA
UHGV-0093065_7	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0093065_7	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0093065_7	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0093065_8	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0093065_8	UniRef90	UniRef90_A0A351TP38	Phage tail tape measure protein (Fragment)	NA
UHGV-0093065_8	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0093065_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0093065_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0093065_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0093065_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0093065_9	eggNOG-mapper	552398.HMPREF0866_01605	NA	NA
UHGV-0093065_10	KOfam	K06908	NA	NA
UHGV-0093065_10	PHROG	phrog_55	head closure	connector
UHGV-0093065_10	UniRef90	UniRef90_UPI0018ABB8AC	phage major tail tube protein	NA
UHGV-0093065_10	eggNOG-mapper	742742.HMPREF9452_00389	Phage tail tube protein FII	NA
UHGV-0093065_10	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0093065_10	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0093065_10	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0093065_11	KOfam	K06907	NA	NA
UHGV-0093065_11	PHROG	phrog_23	tail sheath	tail
UHGV-0093065_11	UniRef90	UniRef90_A0A358PQ22	Phage tail sheath protein	NA
UHGV-0093065_11	eggNOG-mapper	1519439.JPJG01000059_gene1928	COG3497 Phage tail sheath protein FI	NA
UHGV-0093065_11	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0093065_11	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0093065_12	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0093065_12	eggNOG-mapper	537007.BLAHAN_04240	NA	NA
UHGV-0093065_12	Structural annotation	PF08873	NA	NA
UHGV-0093065_13	PHROG	phrog_2551	minor tail protein	tail
UHGV-0093065_13	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0093065_14	Pfam	PF02037	SAP domain	SAP
UHGV-0093065_15	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0093065_15	UniRef90	UniRef90_A0A7G9WG99	Serine/arginine repetitive matrix protein 2	NA
UHGV-0093065_15	eggNOG-mapper	537007.BLAHAN_04228	NA	NA
UHGV-0093065_15	Structural annotation	PF06763	NA	NA
UHGV-0093065_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-0093065_16	UniRef90	UniRef90_UPI00189A2839	major capsid protein	NA
UHGV-0093065_16	eggNOG-mapper	552398.HMPREF0866_01611	Phage major capsid protein E	NA
UHGV-0093065_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0093065_16	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0093065_17	Structural annotation	PF02924	NA	NA
UHGV-0093065_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0093065_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0093065_18	UniRef90	UniRef90_A0A1Q6LL64	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0093065_18	eggNOG-mapper	396359.Q0SPK3_9CAUD	Clp protease	NA
UHGV-0093065_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0093065_18	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0093065_19	PHROG	phrog_21	portal protein	head and packaging
UHGV-0093065_19	UniRef90	UniRef90_A0A3B8S5Y1	Phage portal protein	NA
UHGV-0093065_19	eggNOG-mapper	857293.CAAU_0797	Phage portal protein, lambda family	NA
UHGV-0093065_19	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0093065_19	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0093065_19	COG	COG5511	Phage capsid protein	NA
UHGV-0093065_19	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0093065_20	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0093065_20	UniRef90	UniRef90_UPI001CC15AB9	NA	NA
UHGV-0093065_20	eggNOG-mapper	1235793.C809_02659	NA	NA
UHGV-0093065_20	Pfam	PF19645	NA	DUF6148
UHGV-0093065_20	Structural annotation	PF19645	NA	NA
UHGV-0093065_21	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0093065_21	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0093065_21	UniRef90	UniRef90_A0A7I8DIC5	Terminase	NA
UHGV-0093065_21	eggNOG-mapper	1235793.C809_02658	Phage terminase large subunit (GpA)	NA
UHGV-0093065_21	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0093065_21	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0093065_21	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0093065_21	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0093065_21	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0093065_22	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0093065_22	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0093065_22	UniRef90	UniRef90_A0A1M7U305	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0093065_22	eggNOG-mapper	1449063.JMLS01000030_gene446	NA	NA
UHGV-0093065_22	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0093065_22	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0093065_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093065_23	UniRef90	UniRef90_UPI000E44A7EA	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0093065_23	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0093065_23	Structural annotation	MF_00307	NA	NA
UHGV-0093065_24	UniRef90	UniRef90_A0A6L5YP37	Chemotaxis protein	NA
UHGV-0093065_24	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0093065_24	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0093065_30	PHROG	phrog_5781	NA	unknown function
UHGV-0093065_30	UniRef90	UniRef90_A0A6L5T7G2	NA	NA
UHGV-0093065_30	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-0093065_30	Pfam	PF14359	NA	DUF4406
UHGV-0093065_30	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0093065_31	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0093065_31	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0093065_31	UniRef90	UniRef90_UPI000836EED6	ribonuclease HI	NA
UHGV-0093065_31	eggNOG-mapper	1392491.JIAE01000001_gene1309	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0093065_31	Pfam	PF00075	RNase H	RNase_H
UHGV-0093065_31	COG	COG0328	Ribonuclease HI	NA
UHGV-0093065_31	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0093065_32	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-0093065_34	PHROG	phrog_874	NA	unknown function
UHGV-0093065_34	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0093065_34	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0093065_35	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093065_35	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0093065_35	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0093065_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093065_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093065_35	Structural annotation	COG1403	NA	NA
UHGV-0093065_36	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093065_36	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0093065_36	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0093065_37	PHROG	phrog_15077	NA	unknown function
UHGV-0093065_37	eggNOG-mapper	1235793.C809_02408	NA	NA
UHGV-0093065_38	UniRef90	UniRef90_UPI0008BD6C31	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0093065_38	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0093065_39	PHROG	phrog_8470	NA	unknown function
UHGV-0093065_39	UniRef90	UniRef90_UPI000496E631	PcfJ domain-containing protein	NA
UHGV-0093065_39	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0093065_39	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0093065_39	Structural annotation	PF14284	NA	NA
UHGV-0093065_40	PHROG	phrog_4433	NA	unknown function
UHGV-0093065_40	eggNOG-mapper	1256908.HMPREF0373_03002	NA	NA
UHGV-0093065_40	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0093065_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093065_41	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0093065_41	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0093065_41	Structural annotation	PF21578	NA	NA
UHGV-0093065_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0093065_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0093065_49	UniRef90	UniRef90_A0A4R4FGI2	XRE family transcriptional regulator	NA
UHGV-0093065_49	eggNOG-mapper	525254.HMPREF0072_1327	DNA-binding helix-turn-helix protein	NA
UHGV-0093065_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093065_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093065_49	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0093065_52	PHROG	phrog_1847	NA	unknown function
UHGV-0093065_52	UniRef90	UniRef90_A0A174D4Z6	T5orf172 domain	NA
UHGV-0093065_52	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0093065_52	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0093065_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0093065_53	PHROG	phrog_9659	NA	unknown function
UHGV-0093065_53	UniRef90	UniRef90_UPI000A26FDC2	NA	NA
UHGV-0093065_54	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0093065_54	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0093065_54	UniRef90	UniRef90_UPI001BBF2EB4	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0093065_54	eggNOG-mapper	97139.C824_05960	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0093065_54	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0093065_54	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0093065_54	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0093065_55	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0093065_55	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0093065_55	UniRef90	UniRef90_A0A1C5SMD6	Antitoxin HicB	NA
UHGV-0093065_55	eggNOG-mapper	97139.C824_05961	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0093065_55	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0093065_55	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0093065_55	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0093065_56	KOfam	K14059	int; integrase	NA
UHGV-0093065_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0093065_56	UniRef90	UniRef90_A0A318EPS8	Site-specific recombinase XerD	NA
UHGV-0093065_56	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0093065_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0093065_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093065_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093065_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0093065_57	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0093065_57	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0093065_57	UniRef90	UniRef90_R5EAZ7	RNA polymerase sigma 30 subunit SigH	NA
UHGV-0093065_57	eggNOG-mapper	1469948.JPNB01000001_gene2155	Belongs to the sigma-70 factor family	NA
UHGV-0093065_57	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0093065_57	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0093065_57	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0093065_57	Structural annotation	PF07638, MF_00961, NF006148, COG1191	NA	NA