UHGV-0093075

Genome information

Genome length 35,423 bps

CDS count 59

Completeness 90.88% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093075
vOTU ID	vOTU-059479
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_198973
BioSample	SAMEA3449295
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.21
Jumbo phage	No

Genome content
Genome length	35,423 bps
GC content	50.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.44%
Average CDS length	565.42 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093075_2	PHROG	phrog_18725	NA	unknown function
UHGV-0093075_2	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0093075_2	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0093075_3	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0093075_3	PHROG	phrog_11157	NA	unknown function
UHGV-0093075_3	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0093075_3	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0093075_3	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0093075_3	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0093075_3	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0093075_3	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0093075_3	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0093075_5	PHROG	phrog_13879	NA	unknown function
UHGV-0093075_5	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0093075_5	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0093075_6	PHROG	phrog_1194	NA	unknown function
UHGV-0093075_6	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0093075_6	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0093075_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0093075_7	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0093075_7	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0093075_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0093075_7	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0093075_8	PHROG	phrog_706	NA	unknown function
UHGV-0093075_8	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0093075_8	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0093075_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0093075_8	Structural annotation	PF06854	NA	NA
UHGV-0093075_9	PHROG	phrog_11299	NA	unknown function
UHGV-0093075_9	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0093075_9	Structural annotation	PF10666	NA	NA
UHGV-0093075_10	PHROG	phrog_3099	NA	unknown function
UHGV-0093075_10	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0093075_10	Structural annotation	TIGR02126	NA	NA
UHGV-0093075_11	PHROG	phrog_3266	tail completion	connector
UHGV-0093075_11	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0093075_11	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0093075_11	Structural annotation	PF12691	NA	NA
UHGV-0093075_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0093075_12	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0093075_12	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0093075_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0093075_12	Structural annotation	PF11114	NA	NA
UHGV-0093075_13	PHROG	phrog_3366	NA	unknown function
UHGV-0093075_13	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0093075_13	Pfam	PF20536	NA	DUF6751
UHGV-0093075_13	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0093075_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0093075_14	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0093075_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0093075_15	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0093075_15	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0093075_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0093075_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0093075_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093075_15	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0093075_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0093075_16	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0093075_17	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0093075_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0093075_18	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0093075_18	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0093075_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0093075_18	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0093075_18	COG	COG2369	NA	NA
UHGV-0093075_18	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0093075_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0093075_19	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0093075_19	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0093075_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0093075_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0093075_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093075_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0093075_20	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0093075_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0093075_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0093075_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0093075_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0093075_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093075_20	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0093075_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0093075_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0093075_21	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0093075_21	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0093075_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0093075_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0093075_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0093075_22	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0093075_22	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0093075_23	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0093075_23	UniRef90	UniRef90_A0A845R9C9	Rha family transcriptional regulator	NA
UHGV-0093075_23	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0093075_23	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0093075_23	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0093075_23	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0093075_23	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0093075_24	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093075_24	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0093075_24	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0093075_24	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0093075_24	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0093075_24	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0093075_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093075_25	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0093075_25	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0093075_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0093075_30	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0093075_30	Structural annotation	TIGR03655	NA	NA
UHGV-0093075_37	Structural annotation	TIGR04381	NA	NA
UHGV-0093075_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0093075_39	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093075_39	UniRef90	UniRef90_UPI00131A3D1F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0093075_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0093075_39	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0093075_40	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0093075_40	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0093075_40	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0093075_40	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0093075_40	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0093075_40	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0093075_40	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0093075_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0093075_41	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093075_41	UniRef90	UniRef90_A0A8B3R1H0	Phage replication protein	NA
UHGV-0093075_41	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0093075_41	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0093075_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093075_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093075_43	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0093075_43	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0093075_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093075_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093075_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093075_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093075_43	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0093075_44	PHROG	phrog_7566	NA	unknown function
UHGV-0093075_44	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0093075_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0093075_45	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0093075_45	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0093075_45	Structural annotation	PF05772	NA	NA
UHGV-0093075_46	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0093075_46	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0093075_46	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0093075_46	Pfam	PF06378	NA	DUF1071
UHGV-0093075_46	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0093075_48	PHROG	phrog_4433	NA	unknown function
UHGV-0093075_48	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0093075_48	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0093075_48	Structural annotation	NF007410	NA	NA
UHGV-0093075_50	Structural annotation	NF041588	NA	NA
UHGV-0093075_52	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-0093075_52	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0093075_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093075_52	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0093075_53	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0093075_53	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0093075_53	UniRef90	UniRef90_A0A2Z4Q9W7	Restriction endonuclease	NA
UHGV-0093075_53	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0093075_53	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0093075_53	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0093075_53	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0093075_53	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0093075_53	Structural annotation	PF04471, NF002876, COG1787	NA	NA
UHGV-0093075_54	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0093075_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0093075_55	PHROG	phrog_14556	NA	unknown function
UHGV-0093075_55	eggNOG-mapper	1235802.C823_02972	competence protein COMEC	NA
UHGV-0093075_55	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0093075_56	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-0093075_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093075_56	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0093075_57	UniRef90	UniRef90_A0A8D9PDX9	Histone H3.3 finger-like protein	NA
UHGV-0093075_58	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-0093075_58	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0093075_58	COG	COG5492	NA	NA
UHGV-0093075_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0093075_59	PHROG	phrog_95	integrase	integration and excision
UHGV-0093075_59	UniRef90	UniRef90_A0A1M6M277	Site-specific DNA recombinase	NA
UHGV-0093075_59	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0093075_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0093075_59	Pfam	PF07508	Recombinase	Recombinase
UHGV-0093075_59	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0093075_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0093075_59	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA