UHGV-0093328

Genome information

vOTU vOTU-042096

Genome length 25,596 bps

CDS count 28

Completeness 62.44% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093328
vOTU ID	vOTU-042096
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_196684
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.34
Jumbo phage	No

Genome content
Genome length	25,596 bps
GC content	49.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	87.10%
Average CDS length	800.36 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093328_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0093328_1	UniRef90	UniRef90_D6CTJ2	Putative Phage terminase large subunit	NA
UHGV-0093328_1	eggNOG-mapper	426114.THI_1948	Terminase	NA
UHGV-0093328_1	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0093328_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0093328_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0093328_1	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0093328_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0093328_2	UniRef90	UniRef90_A0A1H8GIP2	Phage portal protein, HK97 family	NA
UHGV-0093328_2	eggNOG-mapper	1005048.CFU_3367	Phage portal protein	NA
UHGV-0093328_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0093328_2	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0093328_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0093328_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0093328_3	KOfam	K06904	NA	NA
UHGV-0093328_3	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0093328_3	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0093328_3	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0093328_3	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0093328_3	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0093328_3	COG	COG3740	Phage head maturation protease	NA
UHGV-0093328_3	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0093328_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-0093328_4	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0093328_4	eggNOG-mapper	1005048.CFU_3365	Phage capsid family	NA
UHGV-0093328_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0093328_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0093328_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093328_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0093328_5	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0093328_5	UniRef90	UniRef90_F8DMX4	Phage DNA packaging protein	NA
UHGV-0093328_5	eggNOG-mapper	575594.ACOH01000006_gene269	Phage gp6-like head-tail connector protein	NA
UHGV-0093328_5	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0093328_5	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0093328_5	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0093328_6	PHROG	phrog_25	head closure Hc1	connector
UHGV-0093328_6	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-0093328_6	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0093328_6	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0093328_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0093328_7	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0093328_7	UniRef90	UniRef90_A0A7U6JN97	Putative membrane protein	NA
UHGV-0093328_7	eggNOG-mapper	1221522.B723_10625	NA	NA
UHGV-0093328_7	Structural annotation	TIGR01725	NA	NA
UHGV-0093328_8	PHROG	phrog_209	portal protein	head and packaging
UHGV-0093328_8	UniRef90	UniRef90_Q8HAC7	Sb11	NA
UHGV-0093328_8	eggNOG-mapper	742821.HMPREF9464_01828	NA	NA
UHGV-0093328_8	Structural annotation	PF09646	NA	NA
UHGV-0093328_9	PHROG	phrog_165	tail sheath	tail
UHGV-0093328_9	UniRef90	UniRef90_A0A5B7ZKE4	Phage tail protein	NA
UHGV-0093328_9	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0093328_9	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0093328_9	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0093328_9	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0093328_9	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0093328_10	PHROG	phrog_185	tail tube protein	tail
UHGV-0093328_10	UniRef90	UniRef90_A0A7T9CA13	Phage tail tube protein	NA
UHGV-0093328_10	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-0093328_10	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0093328_10	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0093328_11	PHROG	phrog_166	tail protein	tail
UHGV-0093328_11	UniRef90	UniRef90_UPI001878FC15	phage tail assembly protein	NA
UHGV-0093328_11	eggNOG-mapper	742821.HMPREF9464_01825	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0093328_11	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0093328_11	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0093328_12	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0093328_12	UniRef90	UniRef90_UPI001BD5BF14	phage tail tape measure protein	NA
UHGV-0093328_12	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0093328_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0093328_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0093328_12	Structural annotation	TIGR01760	NA	NA
UHGV-0093328_13	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0093328_13	UniRef90	UniRef90_E7H535	DNA_circ_N domain-containing protein	NA
UHGV-0093328_13	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0093328_13	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0093328_13	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0093328_13	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0093328_14	PHROG	phrog_177	tail protein	tail
UHGV-0093328_14	UniRef90	UniRef90_A0A524BF35	Baseplate protein	NA
UHGV-0093328_14	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-0093328_14	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0093328_14	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0093328_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0093328_16	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0093328_16	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0093328_16	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0093328_16	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0093328_16	COG	COG4384	NA	NA
UHGV-0093328_16	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0093328_17	PHROG	phrog_180	tail protein	tail
UHGV-0093328_17	UniRef90	UniRef90_UPI001A9577B3	phage GP46 family protein	NA
UHGV-0093328_17	eggNOG-mapper	742821.HMPREF9464_01818	Phage protein GP46	NA
UHGV-0093328_17	Pfam	PF07409	NA	GP46
UHGV-0093328_17	COG	COG4381	NA	NA
UHGV-0093328_18	PHROG	phrog_6	baseplate protein	tail
UHGV-0093328_18	UniRef90	UniRef90_E7H529	Baseplate_J domain-containing protein	NA
UHGV-0093328_18	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0093328_18	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0093328_18	COG	COG3299	NA	NA
UHGV-0093328_18	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0093328_19	PHROG	phrog_203	tail protein	tail
UHGV-0093328_19	UniRef90	UniRef90_A0A6N9TJ05	NA	NA
UHGV-0093328_19	eggNOG-mapper	742821.HMPREF9464_01816	NA	NA
UHGV-0093328_19	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0093328_19	COG	COG3778	NA	NA
UHGV-0093328_19	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0093328_20	PHROG	phrog_9116	tail protein	tail
UHGV-0093328_20	UniRef90	UniRef90_A0A5B7ZM63	Tail fiber protein	NA
UHGV-0093328_20	eggNOG-mapper	556269.ACDQ01000009_gene2025	Phage Tail Collar Domain	NA
UHGV-0093328_20	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0093328_20	COG	COG4675	Phage tail collar domain	NA
UHGV-0093328_20	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0093328_21	KOfam	K14059	int; integrase	NA
UHGV-0093328_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0093328_21	UniRef90	UniRef90_UPI000DE844E1	tyrosine-type recombinase/integrase	NA
UHGV-0093328_21	eggNOG-mapper	742821.HMPREF9464_01814	Belongs to the 'phage' integrase family	NA
UHGV-0093328_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093328_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093328_21	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0093328_22	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0093328_22	UniRef90	UniRef90_UPI0019D5E4CB	phage tail assembly chaperone	NA
UHGV-0093328_22	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-0093328_22	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0093328_22	Structural annotation	PF16778	NA	NA
UHGV-0093328_23	PHROG	phrog_2143	NA	unknown function
UHGV-0093328_23	eggNOG-mapper	742823.HMPREF9465_00917	NA	NA
UHGV-0093328_25	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0093328_25	PHROG	phrog_7	endolysin	lysis
UHGV-0093328_25	UniRef90	UniRef90_A0A4R6DVC0	Lysozyme	NA
UHGV-0093328_25	eggNOG-mapper	1122599.AUGR01000011_gene4029	Phage lysozyme	NA
UHGV-0093328_25	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0093328_25	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0093328_25	HAMAP	MF_04110	Endolysin	NA
UHGV-0093328_25	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0093328_27	KOfam	K14059	int; integrase	NA
UHGV-0093328_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0093328_27	UniRef90	UniRef90_UPI00056EDCAF	site-specific integrase	NA
UHGV-0093328_27	eggNOG-mapper	426117.M446_2924	Belongs to the 'phage' integrase family	NA
UHGV-0093328_27	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0093328_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093328_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093328_27	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0093328_28	KOfam	K23537	nupA; general nucleoside transport system ATP-binding protein	NA
UHGV-0093328_28	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0093328_28	UniRef90	UniRef90_H3KH87	ABC transporter, ATP-binding protein	NA
UHGV-0093328_28	eggNOG-mapper	742823.HMPREF9465_00160	ABC transporter	NA
UHGV-0093328_28	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0093328_28	COG	COG3845	ABC-type guanosine uptake system NupNOPQ, ATPase component NupO	NA