UHGV-0093416

Genome information

Genome length 23,861 bps

CDS count 37

Completeness 68.49% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093416
vOTU ID	vOTU-034299
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_197589
BioSample	SAMEA3449215
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.12
Jumbo phage	No

Genome content
Genome length	23,861 bps
GC content	57.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	92.80%
Average CDS length	600.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093416_1	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0093416_1	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0093416_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0093416_3	PHROG	phrog_38190	NA	unknown function
UHGV-0093416_3	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-0093416_4	PHROG	phrog_6616	tail protein	tail
UHGV-0093416_4	COG	COG4926	Phage-related protein	NA
UHGV-0093416_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0093416_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0093416_6	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0093416_6	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0093416_6	COG	COG1511	NA	NA
UHGV-0093416_7	PHROG	phrog_706	NA	unknown function
UHGV-0093416_7	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0093416_7	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0093416_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0093416_7	Structural annotation	PF06854	NA	NA
UHGV-0093416_8	PHROG	phrog_11299	NA	unknown function
UHGV-0093416_8	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0093416_8	Structural annotation	PF10666	NA	NA
UHGV-0093416_9	PHROG	phrog_3099	NA	unknown function
UHGV-0093416_9	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0093416_9	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0093416_10	PHROG	phrog_3266	tail completion	connector
UHGV-0093416_10	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0093416_10	Structural annotation	PF12691	NA	NA
UHGV-0093416_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0093416_11	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0093416_11	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0093416_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0093416_11	Structural annotation	PF11114	NA	NA
UHGV-0093416_12	PHROG	phrog_3366	NA	unknown function
UHGV-0093416_12	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0093416_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0093416_13	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0093416_14	PHROG	phrog_267	major head protein	head and packaging
UHGV-0093416_14	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0093416_14	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0093416_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0093416_15	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0093416_15	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0093416_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0093416_15	Structural annotation	PF06810	NA	NA
UHGV-0093416_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0093416_16	UniRef90	UniRef90_A0A355KVT5	Phage capsid protein (Fragment)	NA
UHGV-0093416_16	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0093416_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0093416_16	COG	COG2369	NA	NA
UHGV-0093416_16	Structural annotation	PF06152	NA	NA
UHGV-0093416_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0093416_17	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0093416_17	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0093416_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0093416_18	PHROG	phrog_1233	NA	unknown function
UHGV-0093416_18	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0093416_18	Structural annotation	PF13058	NA	NA
UHGV-0093416_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093416_19	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0093416_19	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0093416_19	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0093416_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0093416_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0093416_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0093416_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0093416_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093416_19	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0093416_20	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0093416_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093416_21	eggNOG-mapper	994573.T472_0208800	NA	NA
UHGV-0093416_21	Pfam	PF07374	NA	DUF1492
UHGV-0093416_21	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0093416_22	PHROG	phrog_5781	NA	unknown function
UHGV-0093416_22	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0093416_22	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0093416_22	Pfam	PF14359	NA	DUF4406
UHGV-0093416_22	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0093416_22	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0093416_23	PHROG	phrog_5984	NA	unknown function
UHGV-0093416_23	eggNOG-mapper	1203606.HMPREF1526_01893	NA	NA
UHGV-0093416_23	Structural annotation	PF19561	NA	NA
UHGV-0093416_25	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093416_25	UniRef90	UniRef90_A0A1C6D177	Myb-like DNA-binding domain	NA
UHGV-0093416_25	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0093416_25	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0093416_25	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0093416_25	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0093416_26	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0093416_27	KOfam	K03700	recU; recombination protein U	NA
UHGV-0093416_27	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093416_27	UniRef90	UniRef90_A0A101WC48	Holliday junction resolvase RecU	NA
UHGV-0093416_27	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0093416_27	Pfam	PF03838	Recombination protein U	RecU
UHGV-0093416_27	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0093416_27	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0093416_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093416_28	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0093416_28	Structural annotation	PF21578	NA	NA
UHGV-0093416_31	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0093416_31	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0093416_31	UniRef90	UniRef90_A0A841SSA0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0093416_31	eggNOG-mapper	1120998.AUFC01000033_gene2303	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	NA
UHGV-0093416_31	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0093416_31	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0093416_31	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0093416_31	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0093416_32	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0093416_33	PHROG	phrog_585	NA	unknown function
UHGV-0093416_33	Pfam	PF10711	NA	DUF2513
UHGV-0093416_34	PHROG	phrog_750	NA	unknown function
UHGV-0093416_34	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0093416_36	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0093416_36	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0093416_36	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0093416_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093416_37	UniRef90	UniRef90_A0A354M9E0	HTH cro/C1-type domain-containing protein	NA
UHGV-0093416_37	eggNOG-mapper	658659.HMPREF0983_03304	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093416_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093416_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093416_37	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA