UHGV-0093450

Genome information

Genome length 34,670 bps

CDS count 48

Completeness 68.27% (medium-quality)

geNomad score 0.9648

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093450
vOTU ID	vOTU-042166
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_196008
BioSample	SAMEA3449337
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9648
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.12
Jumbo phage	No

Genome content
Genome length	34,670 bps
GC content	52.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	94.71%
Average CDS length	687.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093450_1	PHROG	phrog_415	polynucleotide kinase	other
UHGV-0093450_1	UniRef90	UniRef90_A0A350MNV4	3'-phosphatase (Fragment)	NA
UHGV-0093450_1	eggNOG-mapper	1122182.KB903833_gene5604	AAA domain	NA
UHGV-0093450_1	COG	COG4639	Predicted kinase	NA
UHGV-0093450_1	Structural annotation	PF08235, MF_01250, TIGR01680, COG2503	NA	NA
UHGV-0093450_3	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0093450_3	eggNOG-mapper	1121441.AUCX01000014_gene525	NA	NA
UHGV-0093450_3	Structural annotation	PF10771, MF_01177, NF041413, COG0640	NA	NA
UHGV-0093450_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0093450_4	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0093450_4	UniRef90	UniRef90_B0MZV1	Methyltransferase	NA
UHGV-0093450_4	eggNOG-mapper	445970.ALIPUT_02676	N-4 methylation of cytosine	NA
UHGV-0093450_4	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0093450_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0093450_4	COG	COG0863	DNA modification methylase	NA
UHGV-0093450_4	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0093450_5	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0093450_5	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0093450_5	UniRef90	UniRef90_A0A5B5VP29	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0093450_5	eggNOG-mapper	1121098.HMPREF1534_01084	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0093450_5	PADLOC	SspD_00001	SspD	SSP
UHGV-0093450_5	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0093450_5	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0093450_5	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0093450_7	eggNOG-mapper	1284775.HMPREF1640_05490	NA	NA
UHGV-0093450_9	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-0093450_12	PHROG	phrog_10841	NA	unknown function
UHGV-0093450_14	PHROG	phrog_8684	NA	unknown function
UHGV-0093450_14	UniRef90	UniRef90_UPI000A5AC279	YopX family protein	NA
UHGV-0093450_14	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0093450_14	Pfam	PF09643	YopX protein	YopX
UHGV-0093450_14	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0093450_14	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0093450_15	PHROG	phrog_874	NA	unknown function
UHGV-0093450_15	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0093450_15	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0093450_17	UniRef90	UniRef90_UPI001297AEBA	MmcB family DNA repair protein	NA
UHGV-0093450_17	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0093450_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093450_21	UniRef90	UniRef90_A0A412XV49	HNH endonuclease	NA
UHGV-0093450_21	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0093450_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093450_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093450_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0093450_22	UniRef90	UniRef90_A0A412GGR3	Phage terminase small subunit P27 family	NA
UHGV-0093450_22	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-0093450_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0093450_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0093450_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0093450_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0093450_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0093450_23	UniRef90	UniRef90_A0A496C8I2	Terminase large subunit	NA
UHGV-0093450_23	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-0093450_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0093450_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0093450_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0093450_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0093450_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0093450_24	UniRef90	UniRef90_E2N7Z9	Phage portal protein, HK97 family	NA
UHGV-0093450_24	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-0093450_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0093450_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0093450_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0093450_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0093450_25	KOfam	K06904	NA	NA
UHGV-0093450_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0093450_25	UniRef90	UniRef90_E5CGA0	HK97 family phage prohead protease	NA
UHGV-0093450_25	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-0093450_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0093450_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0093450_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0093450_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0093450_26	PHROG	phrog_617	major head protein	head and packaging
UHGV-0093450_26	UniRef90	UniRef90_UPI000C053F42	phage major capsid protein	NA
UHGV-0093450_26	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-0093450_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0093450_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0093450_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093450_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0093450_27	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0093450_27	UniRef90	UniRef90_A0A412XUX3	Phage gp6-like head-tail connector protein	NA
UHGV-0093450_27	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-0093450_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0093450_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0093450_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0093450_28	UniRef90	UniRef90_A0A496CCT1	Head-tail adaptor protein	NA
UHGV-0093450_28	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-0093450_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0093450_29	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-0093450_29	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-0093450_29	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0093450_30	UniRef90	UniRef90_UPI001CCBF085	NA	NA
UHGV-0093450_30	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-0093450_30	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0093450_31	PHROG	phrog_1407	major tail protein	tail
UHGV-0093450_31	UniRef90	UniRef90_UPI001913A485	phage tail tube protein	NA
UHGV-0093450_31	eggNOG-mapper	1268240.ATFI01000007_gene413	Phage tail tube protein	NA
UHGV-0093450_31	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0093450_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0093450_32	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-0093450_33	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0093450_33	UniRef90	UniRef90_A0A894KAN2	TMP_3 domain-containing protein	NA
UHGV-0093450_33	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-0093450_33	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0093450_33	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0093450_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0093450_33	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0093450_34	PHROG	phrog_30639	NA	unknown function
UHGV-0093450_34	eggNOG-mapper	997884.HMPREF1068_00297	NA	NA
UHGV-0093450_34	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0093450_35	PHROG	phrog_26822	NA	unknown function
UHGV-0093450_35	UniRef90	UniRef90_UPI00189D96D6	collagen-like protein	NA
UHGV-0093450_35	eggNOG-mapper	1347393.HG726027_gene2419	Phage minor structural protein	NA
UHGV-0093450_35	COG	COG4926	Phage-related protein	NA
UHGV-0093450_36	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0093450_37	Structural annotation	PF14545	NA	NA
UHGV-0093450_39	Structural annotation	PF02185	NA	NA
UHGV-0093450_41	PHROG	phrog_15037	NA	unknown function
UHGV-0093450_41	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0093450_41	eggNOG-mapper	1347393.HG726021_gene389	NA	NA
UHGV-0093450_43	PHROG	phrog_873	endolysin	head and packaging
UHGV-0093450_43	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0093450_43	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0093450_44	PHROG	phrog_26448	NA	unknown function
UHGV-0093450_44	eggNOG-mapper	742726.HMPREF9448_01214	NA	NA
UHGV-0093450_44	Pfam	PF20647	NA	DUF6808
UHGV-0093450_44	Structural annotation	PF20647	NA	NA