UHGV-0093532

Genome information

Genome length 40,960 bps

CDS count 73

Completeness 99.64% (high-quality)

geNomad score 0.9667

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093532
vOTU ID	vOTU-073242
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_168415
BioSample	SAMEA3136738
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9667
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.01
Jumbo phage	No

Genome content
Genome length	40,960 bps
GC content	27.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.05%
Average CDS length	508.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093532_2	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0093532_2	Structural annotation	PF09388	NA	NA
UHGV-0093532_3	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0093532_3	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0093532_6	PHROG	phrog_18955	NA	unknown function
UHGV-0093532_6	UniRef90	UniRef90_A0A1Q6LC62	SH3b domain-containing protein	NA
UHGV-0093532_6	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0093532_6	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0093532_6	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0093532_6	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0093532_6	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0093532_15	PHROG	phrog_13564	minor tail protein	tail
UHGV-0093532_15	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0093532_15	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0093532_16	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-0093532_16	PHROG	phrog_17321	NA	unknown function
UHGV-0093532_16	UniRef90	UniRef90_R7FHV4	Phage tail tape measure protein family	NA
UHGV-0093532_16	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0093532_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0093532_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0093532_16	COG	COG1340	NA	NA
UHGV-0093532_16	Structural annotation	PF10145, PF16746, TIGR01760	NA	NA
UHGV-0093532_18	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0093532_18	Structural annotation	PF10552	NA	NA
UHGV-0093532_19	PHROG	phrog_15609	NA	unknown function
UHGV-0093532_19	UniRef90	UniRef90_UPI000D0BB7C5	NA	NA
UHGV-0093532_19	eggNOG-mapper	1262449.CP6013_1921	NA	NA
UHGV-0093532_19	Pfam	PF11300	NA	DUF3102
UHGV-0093532_19	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0093532_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0093532_24	UniRef90	UniRef90_A0A2C1RHH7	Phage tail protein	NA
UHGV-0093532_24	eggNOG-mapper	1027396.LMOSA_21460	NA	NA
UHGV-0093532_24	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0093532_25	PHROG	phrog_5509	neck protein	connector
UHGV-0093532_25	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-0093532_26	PHROG	phrog_5910	NA	unknown function
UHGV-0093532_27	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0093532_27	UniRef90	UniRef90_UPI0005B26F31	phage head closure protein	NA
UHGV-0093532_27	eggNOG-mapper	1347392.CCEZ01000045_gene13	NA	NA
UHGV-0093532_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0093532_28	PHROG	phrog_749	NA	unknown function
UHGV-0093532_28	UniRef90	UniRef90_UPI0010267962	head-tail connector protein	NA
UHGV-0093532_28	eggNOG-mapper	1139219.I569_00234	NA	NA
UHGV-0093532_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0093532_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0093532_29	UniRef90	UniRef90_A0A0C3H6H2	Major capsid protein	NA
UHGV-0093532_29	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0093532_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0093532_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0093532_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093532_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0093532_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0093532_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0093532_30	UniRef90	UniRef90_A0A7U4LNK5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0093532_30	eggNOG-mapper	1295642.H839_15963	Serine dehydrogenase proteinase	NA
UHGV-0093532_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0093532_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0093532_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0093532_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0093532_31	UniRef90	UniRef90_UPI001CD73BD1	phage portal protein	NA
UHGV-0093532_31	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0093532_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0093532_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0093532_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0093532_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0093532_32	UniRef90	UniRef90_C3DP22	Phage terminase, large subunit	NA
UHGV-0093532_32	eggNOG-mapper	1450694.BTS2_0545	Terminase	NA
UHGV-0093532_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0093532_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0093532_32	Structural annotation	PF20441, MF_04147, TIGR01547, COG4626	NA	NA
UHGV-0093532_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0093532_33	UniRef90	UniRef90_A0A6B4SLR3	Terminase large subunit (Fragment)	NA
UHGV-0093532_33	eggNOG-mapper	1415774.U728_1255	Phage Terminase	NA
UHGV-0093532_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0093532_34	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0093532_34	UniRef90	UniRef90_A0A2N5Q1Z2	RNA polymerase subunit sigma-70	NA
UHGV-0093532_34	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0093532_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0093532_36	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093532_36	UniRef90	UniRef90_UPI001027006A	HNH endonuclease	NA
UHGV-0093532_36	eggNOG-mapper	698758.AXY_02080	HNH nucleases	NA
UHGV-0093532_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093532_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093532_41	PHROG	phrog_10192	NA	unknown function
UHGV-0093532_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093532_42	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0093532_47	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0093532_47	UniRef90	UniRef90_A0A0R2A699	N6_Mtase domain-containing protein	NA
UHGV-0093532_47	eggNOG-mapper	146269.A8YQM7_9CAUD	DNA methylation	NA
UHGV-0093532_47	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0093532_48	KOfam	K14059	int; integrase	NA
UHGV-0093532_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0093532_48	UniRef90	UniRef90_A0A7U9RPP2	Transposase from transposon Tn916	NA
UHGV-0093532_48	eggNOG-mapper	796940.HMPREF9628_00060	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0093532_48	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0093532_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093532_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093532_50	Structural annotation	TIGR00739	NA	NA
UHGV-0093532_52	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0093532_52	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0093532_52	UniRef90	UniRef90_A0A1Q6TZF2	Methyltransferase	NA
UHGV-0093532_52	eggNOG-mapper	469596.HMPREF9488_00879	DNA methylase	NA
UHGV-0093532_52	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0093532_52	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0093532_52	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0093532_54	PHROG	phrog_1123	NA	unknown function
UHGV-0093532_54	UniRef90	UniRef90_A0A7X6P6Q9	DNA gyrase	NA
UHGV-0093532_54	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0093532_54	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0093532_57	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0093532_57	UniRef90	UniRef90_A0A316S970	DNA replication protein DnaD (Fragment)	NA
UHGV-0093532_57	eggNOG-mapper	1168613.I1W658_9CAUD	calcium ion binding	NA
UHGV-0093532_58	PHROG	phrog_7566	NA	unknown function
UHGV-0093532_58	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0093532_59	PHROG	phrog_25509	NA	unknown function
UHGV-0093532_60	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093532_60	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093532_60	UniRef90	UniRef90_R6YHT0	Single-stranded DNA-binding protein	NA
UHGV-0093532_60	eggNOG-mapper	394503.Ccel_0056	Single-stranded DNA-binding protein	NA
UHGV-0093532_60	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093532_60	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093532_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093532_60	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093532_60	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0093532_61	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0093532_61	UniRef90	UniRef90_A0A7X7HFU7	AAA family ATPase	NA
UHGV-0093532_61	eggNOG-mapper	1329516.JPST01000033_gene2854	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0093532_61	Pfam	PF13479	AAA domain	AAA_24
UHGV-0093532_61	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0093532_61	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0093532_69	UniRef90	UniRef90_UPI001898FD36	NA	NA
UHGV-0093532_69	eggNOG-mapper	186153.Q8SDN2_BPPHD	NA	NA
UHGV-0093532_69	Pfam	PF05339	NA	DUF739
UHGV-0093532_69	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0093532_70	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0093532_70	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0093532_70	UniRef90	UniRef90_UPI000F8F6018	helix-turn-helix domain-containing protein	NA
UHGV-0093532_70	eggNOG-mapper	1215915.BN193_09255	Peptidase S24-like	NA
UHGV-0093532_70	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093532_70	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093532_70	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0093532_71	PHROG	phrog_87	metallo-protease	other
UHGV-0093532_71	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0093532_71	eggNOG-mapper	1415774.U728_3391	Zn peptidase	NA
UHGV-0093532_71	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0093532_71	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0093532_71	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0093532_72	KOfam	K14059	int; integrase	NA
UHGV-0093532_72	PHROG	phrog_1	integrase	integration and excision
UHGV-0093532_72	UniRef90	UniRef90_A0A1Q6LED8	Tyr recombinase domain-containing protein	NA
UHGV-0093532_72	eggNOG-mapper	1462527.CCDM010000010_gene473	Phage integrase family	NA
UHGV-0093532_72	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093532_72	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093532_72	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA