UHGV-0093590

Genome information

Genome length 42,809 bps

CDS count 72

Completeness 100.00% (complete)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093590
vOTU ID	vOTU-045341
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_195171
BioSample	SAMEA3449333
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.01
Jumbo phage	No

Genome content
Genome length	42,809 bps
GC content	39.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	92.47%
Average CDS length	555.04 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093590_1	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0093590_1	UniRef90	UniRef90_A0A6L6XJP0	Radical SAM protein	NA
UHGV-0093590_1	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0093590_1	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0093590_1	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0093590_2	UniRef90	UniRef90_A0A0F0C7S4	LexA repressor	NA
UHGV-0093590_2	eggNOG-mapper	697281.Mahau_0048	LexA DNA binding domain	NA
UHGV-0093590_2	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0093590_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0093590_2	Structural annotation	PF01726, MF_00732, NF006812, COG3388	NA	NA
UHGV-0093590_3	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0093590_5	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-0093590_5	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0093590_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093590_5	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0093590_9	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093590_9	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0093590_10	PHROG	phrog_33130	NA	unknown function
UHGV-0093590_10	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0093590_10	Structural annotation	PF10922	NA	NA
UHGV-0093590_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093590_11	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0093590_11	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0093590_11	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0093590_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0093590_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0093590_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093590_11	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0093590_12	PHROG	phrog_1233	NA	unknown function
UHGV-0093590_12	eggNOG-mapper	1120978.KB894086_gene458	NA	NA
UHGV-0093590_12	Structural annotation	PF13058	NA	NA
UHGV-0093590_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0093590_13	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0093590_13	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0093590_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0093590_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0093590_15	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0093590_15	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0093590_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0093590_15	Structural annotation	PF11114	NA	NA
UHGV-0093590_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0093590_16	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0093590_16	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0093590_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0093590_16	COG	COG2369	NA	NA
UHGV-0093590_16	Structural annotation	PF06152	NA	NA
UHGV-0093590_18	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0093590_19	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0093590_20	PHROG	phrog_16490	NA	unknown function
UHGV-0093590_20	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0093590_21	PHROG	phrog_20016	NA	unknown function
UHGV-0093590_21	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0093590_21	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0093590_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0093590_22	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0093590_23	PHROG	phrog_1233	NA	unknown function
UHGV-0093590_23	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0093590_23	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0093590_23	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0093590_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0093590_25	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0093590_25	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0093590_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0093590_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-0093590_26	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0093590_26	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0093590_26	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0093590_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0093590_27	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0093590_28	PHROG	phrog_3366	NA	unknown function
UHGV-0093590_28	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0093590_28	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0093590_29	Structural annotation	PF12691	NA	NA
UHGV-0093590_30	PHROG	phrog_3099	NA	unknown function
UHGV-0093590_30	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0093590_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0093590_31	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0093590_31	Structural annotation	PF10666	NA	NA
UHGV-0093590_32	PHROG	phrog_706	NA	unknown function
UHGV-0093590_32	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0093590_32	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0093590_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0093590_32	Structural annotation	PF06854	NA	NA
UHGV-0093590_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0093590_33	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0093590_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0093590_34	PHROG	phrog_1194	NA	unknown function
UHGV-0093590_34	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0093590_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0093590_35	PHROG	phrog_13879	NA	unknown function
UHGV-0093590_35	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0093590_35	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0093590_37	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0093590_37	PHROG	phrog_11157	NA	unknown function
UHGV-0093590_37	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0093590_37	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0093590_37	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0093590_37	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0093590_37	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0093590_38	PHROG	phrog_18725	NA	unknown function
UHGV-0093590_38	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0093590_38	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0093590_41	PHROG	phrog_4105	NA	unknown function
UHGV-0093590_41	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0093590_42	PHROG	phrog_1129	holin	lysis
UHGV-0093590_42	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0093590_42	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0093590_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0093590_42	Structural annotation	PF06946	NA	NA
UHGV-0093590_43	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0093590_43	PHROG	phrog_435	endolysin	lysis
UHGV-0093590_43	UniRef90	UniRef90_A0A1Q6KUK5	SPOR domain-containing protein	NA
UHGV-0093590_43	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0093590_43	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0093590_43	Pfam	PF05036	SPOR domain	SPOR
UHGV-0093590_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0093590_43	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0093590_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0093590_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0093590_44	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0093590_44	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0093590_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0093590_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0093590_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0093590_44	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0093590_45	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0093590_45	PHROG	phrog_10292	NA	unknown function
UHGV-0093590_45	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-0093590_45	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0093590_45	Pfam	PF05154	TM2 domain	TM2
UHGV-0093590_45	COG	COG2314	NA	NA
UHGV-0093590_47	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0093590_47	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0093590_47	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0093590_47	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093590_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0093590_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093590_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093590_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0093590_50	Structural annotation	PF11127	NA	NA
UHGV-0093590_52	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0093590_53	PHROG	phrog_14970	NA	unknown function
UHGV-0093590_53	UniRef90	UniRef90_UPI0011AF792D	Rad52/Rad22 family DNA repair protein	NA
UHGV-0093590_53	eggNOG-mapper	1235799.C818_00195	double-strand break repair protein	NA
UHGV-0093590_53	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0093590_53	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0093590_54	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0093590_54	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0093590_54	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0093590_54	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0093590_55	PHROG	phrog_7566	NA	unknown function
UHGV-0093590_55	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0093590_55	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0093590_56	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0093590_56	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0093590_56	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0093590_56	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0093590_56	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0093590_56	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0093590_56	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0093590_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0093590_57	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093590_57	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0093590_57	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0093590_57	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0093590_58	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0093590_58	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0093590_58	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0093590_58	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0093590_59	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0093590_59	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0093590_59	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0093590_59	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0093590_59	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0093590_59	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0093590_59	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0093590_63	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0093590_63	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093590_64	PHROG	phrog_98	NA	unknown function
UHGV-0093590_64	UniRef90	UniRef90_A0A412FGY3	YopX domain-containing protein	NA
UHGV-0093590_64	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0093590_64	Pfam	PF09643	YopX protein	YopX
UHGV-0093590_64	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0093590_64	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0093590_65	Structural annotation	PF14282	NA	NA
UHGV-0093590_66	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0093590_66	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0093590_66	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0093590_66	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0093590_66	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0093590_66	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0093590_67	PHROG	phrog_20593	NA	unknown function
UHGV-0093590_67	AcrCatalog	cluster_27421	NA	NA
UHGV-0093590_69	PHROG	phrog_874	NA	unknown function
UHGV-0093590_69	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0093590_69	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0093590_69	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0093590_71	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0093590_71	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0093590_71	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0093590_71	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0093590_71	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0093590_72	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0093590_72	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0093590_72	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0093590_72	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0093590_72	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0093590_72	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0093590_72	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0093590_72	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA